Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00377 ATGTCAAACATCACTAGTTGTGATAGTGGGAGCTTCTCTACAGAGAATACCAGAGAAGATGCAGCAGTTAAACAGCAATCTGAGATGCTTGGTCAGTTCCATAGTCCACATTCTCTTACTTCAACTACAACAACAAATAATAGCAATGGTTCCAATACAAATTCACAACCACCTGCACCTGTTAAGAAGAAAAGGAGCCTACCAGGAAATCCAGATCCAAGTGCTGAAGTTATAGCTTTATCACCAAACACACTAATGGCCACAAACCGGTTCATATGTGAAATCTGCAACAAAGGTTTCCAAAGAGATCAAAACCTTCAGTTGCACCGGCGAGGCCACAACTTGCCGTGGAAGCTTAAGCAGAGAACAAGCACAGAGGTTCGAAAGAGGGTTTATGTTTGTCCAGAACCTTCGTGTGTCCACCACAATCCTGCAAGAGCACTTGGAGACCTCACCGGCATTAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAATGGAAATGTGATAAGTGCTCAAAGAAATACGCTGTTCAGTCTGACTGGAAAGCCCACTCAAAAATCTGTGGTACAAGAGAATACAAATGTGACTGTGGTACCATTTTTTCCAGAAGAGACAGTTTCATTACACACAGAGCTTTCTGTGACGCACTAGCTGAAGAGAACAACAAAGCCAACGAAGGACAATTACCAAAGATAGGTCCAAACTTGCAGTGCCAACAGATTCCGAACCTCGTTTCCTCATTACCAATCAACACCAACATTGTTCCCAACCCACAAATTGGTGGCACCTCAGAGTTCAACCATGCTGAACACAAGCACCCACTATCACTCCCACACGAGCTAATGCCAATGCCTGCACCAAAACCCTTCAACAACACCACCACCATGGCAGGAACAGTGTTCTCGAGAAGCCTCTCATCGACCTCTTCACCCTCTCTCCAACTAAGTTCAAACATATTCGAAGAAAACGGGCTCCACCTGGCTGCAGGATCGCCACACATGTCAGCCACGGCACTGCTGCAAAAAGCTGCGCAAATGGGAGCAACAGTGACAGAGAAAACTTTTACCACAAACATGGCACCGCCATCGTTTGGGGTGCTGCAACAGCAGCCGAGTGGACAATCCTTCATGAACCAATACATGCACGGTGGCCAACAGGATGCTAACGTCAACCTCTCCCCTCAGTATAATGGTTTTGGTGCAAATGGGATGAGTGGAGGGAGCGTTGGAATGAACGGTGTGGACATGTTCAACGCTATTTTGGACCAAAGCAAGGCTTTATCAAAGATCATAGAGCAAAGCAATAGAAGCAGTAGTGGAGGACCAACAAATGGAGGTTCAAGTGGTGCCATTAACGTTGGAGGAAGTAAAGGAAGTGGGGATGTAATGACTTTGGACTTTTTGGGAATAGGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGAGGTGCACATGGAAACTTCTATGGTGGTGCTCAACAAGCAGAAAATGGTGCAGCAGATGAGGTTTGGAGAAACTGGTCAAGTAAGAACGCAGGGTTTGAATCATTTTCAGCAACAAGTAGCATTTGA 1578 0.462 MSNITSCDSGSFSTENTREDAAVKQQSEMLGQFHSPHSLTSTTTTNNSNGSNTNSQPPAPVKKKRSLPGNPDPSAEVIALSPNTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSTEVRKRVYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNKANEGQLPKIGPNLQCQQIPNLVSSLPINTNIVPNPQIGGTSEFNHAEHKHPLSLPHELMPMPAPKPFNNTTTMAGTVFSRSLSSTSSPSLQLSSNIFEENGLHLAAGSPHMSATALLQKAAQMGATVTEKTFTTNMAPPSFGVLQQQPSGQSFMNQYMHGGQQDANVNLSPQYNGFGANGMSGGSVGMNGVDMFNAILDQSKALSKIIEQSNRSSSGGPTNGGSSGAINVGGSKGSGDVMTLDFLGIGGGGGGGGGGGGGGAHGNFYGGAQQAENGAADEVWRNWSSKNAGFESFSATSSI* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00377 525 SUPERFAMILY beta-beta-alpha zinc fingers 90 187 IPR036236 -
Lapu7g00377 525 MobiDBLite consensus disorder prediction 1 20 - -
Lapu7g00377 525 Gene3D Classic Zinc Finger 146 225 - -
Lapu7g00377 525 Pfam Zinc-finger double-stranded RNA-binding 91 113 IPR022755 -
Lapu7g00377 525 ProSitePatterns Zinc finger C2H2 type domain signature. 93 113 IPR013087 -
Lapu7g00377 525 Gene3D Classic Zinc Finger 70 137 - -
Lapu7g00377 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 91 113 IPR013087 -
Lapu7g00377 525 MobiDBLite consensus disorder prediction 28 60 - -
Lapu7g00377 525 MobiDBLite consensus disorder prediction 1 76 - -
Lapu7g00377 525 MobiDBLite consensus disorder prediction 433 455 - -
Lapu7g00377 525 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 42 492 IPR031140 -
Lapu7g00377 525 MobiDBLite consensus disorder prediction 433 456 - -
Lapu7g00377 525 FunFam protein indeterminate-domain 5, chloroplastic-like 145 224 - -
Lapu7g00377 525 SMART c2h2final6 167 187 IPR013087 -
Lapu7g00377 525 SMART c2h2final6 132 162 IPR013087 -
Lapu7g00377 525 SMART c2h2final6 91 113 IPR013087 -
Lapu7g00377 525 FunFam protein indeterminate-domain 12-like 70 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00377 Lapu-Chr7 4544821 4548888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00377 48 349 IDZ Gene Family AT3G50700 56.923 4.96e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g00377 zf-C2H2_jaz 7.8e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00377 - - gmx:100785295 880.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02159 6 21226806 21230155 Lapu7g00377 7 4544821 4548888 ECH
Lapu7g00377 7 4544821 4548888 Lapu7g00377 7 4544821 4548888 ECH
Lapu1g02125 1 35305668 35310483 Lapu7g00377 7 4544821 4548888 PCT
Lapu6g02159 6 21226806 21230155 Lapu7g00377 7 4544821 4548888 PCT