Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00375 ATGGATCAGGAGGAGCAAGATAAAGCGTTGCCCATTGCAAATGTGGGTAGAATCATGAAGCAAATTCTTCCTCCTAGTGCAAAGATCTCCAAGGAAGGGAAACAACTAATGCAAGAGTGTGTGACAGAGTTCATAAGTTTTGTGACTGGTGAGGCATCTGACAAGTGTCACAAGGAGAATCGCAAGACCGTTAATGGGGATGACATCTGTTGGGCTCTAAGTTCCTTAGGGTTTGACAACTATGCTGAGGCCATAGCAAGGTACTTGCATAAATACAGGCAAGCTGAAAGGGAGAAAATGGATCACAACAAGAAATATGAAGGATCAGCAACAAAAACTCTCAACCAACCTCAACTTATCCTTGCTCCACCACCACCATCATCACTCTCTAGGGTTACTGACAAGGTTGAAAACCCTCCCACTACAAATCAATCTGGATGA 441 0.4376 MDQEEQDKALPIANVGRIMKQILPPSAKISKEGKQLMQECVTEFISFVTGEASDKCHKENRKTVNGDDICWALSSLGFDNYAEAIARYLHKYRQAEREKMDHNKKYEGSATKTLNQPQLILAPPPPSSLSRVTDKVENPPTTNQSG* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00375 146 Coils Coil 78 105 - -
Lapu7g00375 146 SUPERFAMILY Histone-fold 6 111 IPR009072 GO:0046982
Lapu7g00375 146 FunFam Nuclear transcription factor Y subunit B-6 1 114 - -
Lapu7g00375 146 Gene3D Histone, subunit A 1 121 IPR009072 GO:0046982
Lapu7g00375 146 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 10 73 IPR003958 -
Lapu7g00375 146 ProSitePatterns NF-YB/HAP3 subunit signature. 40 56 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lapu7g00375 146 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 3 107 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lapu7g00375 146 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lapu7g00375 146 PRINTS CCAAT-binding transcription factor subunit A signature 37 55 - -
Lapu7g00375 146 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Lapu7g00375 146 MobiDBLite consensus disorder prediction 131 146 - -
Lapu7g00375 146 MobiDBLite consensus disorder prediction 97 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00375 Lapu-Chr7 4512214 4512654 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00375 5 104 CCAAT-HAP3 Transcription Factor Family AT1G09030 75.000 5.98e-57 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lapu7g00375 CBFD_NFYB_HMF 3.7e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00375 K08065 - gmx:100815151 233.032