Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00352 ATGGATCATCAAGGGCATGGGCATGGCCAGAACCCATCTCTGGGAGTTGCTGGAAATGGACCTCAACTCACTTATGGTTCTAATCCATACCAGGCCAGTCACATAGCAGGTTCACCTGGGATGGTTGTTGCATCACCTGGTACCATTCAATCCACCGGTCAATCTGCTGCAACTCAGTTAGGACAGCATCAACTTGCTTATCAGCACATGCATCAGCACCAGCAGCAGCTGCAGCAAAGACTCCAAGCCTTTTGGGCAAATCAATATCAAGAAATTGAGAAGGTGACTGATTTCAAGAACCACAGTCTTCCCTTGGCAAGGATCAAAAAGATTATGAAGGCGGATGAGGATGTCAGAATGATATCAGCTGAGGCACCTGTCATATTTGCAAGGGCATGTGAAATGTTTATATTGGAGTTAACCTTACGAGCTTGGAATCACACTGAAGAGAACAAAAGGAAAACACTTCAAAAGAATGATATTGCAGCAGCCATCACAAGGACTGATATCTTTGATTTCTTGGTTGACATTGTGCCTCGGGAGGACTTCAAAGATGAAGTGCTTGCATCAATGCCAAGAGGAACTGTACCTGTTACAGGGCCACCCGAGACTCTTCCTTATTGCTATATGCCACCTCAACATGCACAAGTTGGAACTGCTGGTGTCATGATGGGTAATAAGCCTGTGATGGACCCTTATGCTCAACAGTCTCATCACTACAGCATGGCACCACAAATGTGGCCACAGCCACCAGAGCAACAACAATCATCTCCAGACCAGTAG 783 0.461 MDHQGHGHGQNPSLGVAGNGPQLTYGSNPYQASHIAGSPGMVVASPGTIQSTGQSAATQLGQHQLAYQHMHQHQQQLQQRLQAFWANQYQEIEKVTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFARACEMFILELTLRAWNHTEENKRKTLQKNDIAAAITRTDIFDFLVDIVPREDFKDEVLASMPRGTVPVTGPPETLPYCYMPPQHAQVGTAGVMMGNKPVMDPYAQQSHHYSMAPQMWPQPPEQQQSSPDQ* 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00352 260 SUPERFAMILY Histone-fold 57 174 IPR009072 GO:0046982
Lapu7g00352 260 MobiDBLite consensus disorder prediction 1 31 - -
Lapu7g00352 260 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 64 226 - -
Lapu7g00352 260 MobiDBLite consensus disorder prediction 15 31 - -
Lapu7g00352 260 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 102 165 IPR003958 -
Lapu7g00352 260 FunFam Nuclear transcription factor Y subunit gamma 68 180 - -
Lapu7g00352 260 Gene3D Histone, subunit A 65 180 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00352 Lapu-Chr7 4346333 4347115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00352 1 226 CCAAT-HAP5 Transcription Factor Family AT1G08970 62.009 2.50e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Lapu7g00352 CBFD_NFYB_HMF 3.9e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00352 K08066 - gmx:100785287 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00352 7 4346333 4347115 Lapu7g00352 7 4346333 4347115 ECH
Lapu6g02135 6 21033130 21036435 Lapu7g00352 7 4346333 4347115 ECH
Lapu6g02135 6 21033130 21036435 Lapu7g00352 7 4346333 4347115 PCT