Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00348 ATGGAGAACTCAAATGGCTCTTATGGAAATGGAGACATTTACTTTCTTCTCCTCCTCCTCCTCTTTCCTCTTGCGGCTGCACAATCTCCTAACAATAATCAAAACGAATCCTATTACAACCGCTTCAGCCCTTCCATGGCCATCATAATCGTCATCCTCATCGCCGCGGTCTTCCTCATGGGCTTCTTCTCCATCTACATCCGCCACTGCGCCGACTCCCCCTCCGCCAGCATCCGCAACCTCACCGGAGCCACCAACCGCCCGCGCCGCGGCCTCGACCAGGCGGTCATCGACACTTTCCCCACGCTCGAATACTCCGTCGTCAAGATCCACAAGCTCGGAAAGGGGACGCTGGAGTGCGCGGTGTGCTTAAACGAGTTCGAGGACACCGAAACGCTGCGTTTGATCCCCAAGTGCGACCACGTGTTCCACCCGGAGTGCATCGACGAGTGGCTCGCCTCCCACACCACCTGCCCCGTCTGCCGCGCCAACCTCGTCCCCGAGCCCGGCGACTCCGTCAGAGGAGTCCCAGTTCTCGACGCTCCTAATGACATCGAGGCCCAACCCGAGGCCCAACCCGAGGCCCACAACGACGCCGTTGAGTCTTTTCCCGAACAACAGCAAGAGCCAAAGCTTCCAATTTCCTCCGAGCCCCCTCAAGTGCTCAGCTTGAATCAGACGCTGAACCGGAACCGCACGAGAGGCTCCCGGTCGGGCCGCCCCCGGCGGTTCCCGCGCTCTCACTCGACGGGTCATTCGCTGGTCCAACCCGGGGAGGACACTGAACGGTTCACCTTGAGGCTACCGGAGGAAGTTAGAAAACAGATACTTCTGAACCCGGAACTGCATCGAGCGAGAAGCTTGGTCATGTTGCCCAGGGAAGGTAGTTCCCGGCGTGGATATCGAACCGGCGAGGGAAGTAGCAGAGGGAGGTCTTCGAGGCGGTTGGACCGGGGGTTCAAGTCTGACCGGTGGGTTTTCACGATGGCGCCGCCCTTTTTAGTGAGGGCCACGTCAGTTAGGTCCCCAAGGGTGGCCAACAATAATGGCGGCGCAGGAACATCCGTTTCTGCTCCCTCTCCGCCGCCTCCTGCTGTGGAATCTGTTTGA 1110 0.5946 MENSNGSYGNGDIYFLLLLLLFPLAAAQSPNNNQNESYYNRFSPSMAIIIVILIAAVFLMGFFSIYIRHCADSPSASIRNLTGATNRPRRGLDQAVIDTFPTLEYSVVKIHKLGKGTLECAVCLNEFEDTETLRLIPKCDHVFHPECIDEWLASHTTCPVCRANLVPEPGDSVRGVPVLDAPNDIEAQPEAQPEAHNDAVESFPEQQQEPKLPISSEPPQVLSLNQTLNRNRTRGSRSGRPRRFPRSHSTGHSLVQPGEDTERFTLRLPEEVRKQILLNPELHRARSLVMLPREGSSRRGYRTGEGSSRGRSSRRLDRGFKSDRWVFTMAPPFLVRATSVRSPRVANNNGGAGTSVSAPSPPPPAVESV* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00348 369 SMART ring_2 120 161 IPR001841 -
Lapu7g00348 369 MobiDBLite consensus disorder prediction 201 234 - -
Lapu7g00348 369 ProSiteProfiles Zinc finger RING-type profile. 120 162 IPR001841 -
Lapu7g00348 369 MobiDBLite consensus disorder prediction 293 316 - -
Lapu7g00348 369 MobiDBLite consensus disorder prediction 341 356 - -
Lapu7g00348 369 MobiDBLite consensus disorder prediction 298 316 - -
Lapu7g00348 369 MobiDBLite consensus disorder prediction 189 262 - -
Lapu7g00348 369 PANTHER RING FINGER DOMAIN-CONTAINING 30 173 - -
Lapu7g00348 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 167 IPR013083 -
Lapu7g00348 369 FunFam E3 ubiquitin-protein ligase ATL6 80 168 - -
Lapu7g00348 369 Pfam Ring finger domain 119 162 IPR001841 -
Lapu7g00348 369 CDD RING-H2_EL5-like 119 162 - -
Lapu7g00348 369 SUPERFAMILY RING/U-box 113 168 - -
Lapu7g00348 369 MobiDBLite consensus disorder prediction 338 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00348 Lapu-Chr7 4310300 4312141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00348 13 358 Rapid Response to Elicitors AT3G05200 45.780 3.40e-95 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00348 K10664 - gmx:100810865 501.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00348 7 4310300 4312141 Lapu7g00348 7 4310300 4312141 ECH
Lapu6g02130 6 20998853 21000383 Lapu7g00348 7 4310300 4312141 PCT