Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00339 ATGGCCAATCACACACTAGACCCGTGTTGTTTAGGGGAAAAGGACAACGGCGAAGCGAATAAACCGAAAAAGATTTCGCTTGGTGAAGCTTTAAATCTTAATCCCGAAAAAGGACGTTTTTCTTGCTCATCCTCAGCTCATGACTTGAGGCATTTAGAATTGGACAAAGAGAGAGAAAATATTGCATCACCGAGAGGAGTTTTAGAAGCATGCATGAAAGACTTTGACTGTCGACCATTATCTACGCCGGCAACCACTTCTTCAAGCACAAGGGCACACTCTAATTGGACCAATTTTTTCAGACTTCTGAAAAAAAAATCTTTTAAGCGGCTAGGGTCCCTCTCCCATTTTAGTGCTCCAAAGTTACCAAAGTGGAAAAGCAGAAGTAGTAGAAAAAATGACGTTCTAAGTAAGCTATACAATTTCAACTCTTCTTGGGTCACTTTCAACCTTTCTGACTTAAGAAATGCAACCAACAATTTTGACAGCGAAAATATAATTGGAAGAGGTGGTTTTGCTGATGTTTACAAGGGGTGTCTCCAAGATGGACAATTAATAGCTGTGAAGAAATTGAATAAAGGAACCACAGATGAAAAAACCGCGGGCTTTCTATCTGAGCTTGGCATAATTGCTCATGTTGATCATCCTAATACTGCCAAGCTAGTTGGATGTTGTGTAGAAGGAGAAATGCAACTTGTCTTTGAACTATCTACACTAGGAAGTTTAGGATCTCTTCTTCATGGTTCGGATAAAAACAAATTAGATTGGAGTAAAAGGTATAAAATTGCTCTGGGAATAGCTGATGGTCTCCTCTATCTGCATGAGAATTGTCACAGGCGAATCATTCATAGAGATATTAAGGCAGAGAACATTCTACTCACGGAGAATTTTGAGCCACAGATTGTCACACTGCTAAGAGGTGATAAGTACCTCGTGGAATCTACAGAAGCAAGGGGAAGGAGACATCTCCAAAGAACATTCTCAGAAGAGCTATTGGATGTGCAAGAATACAACTCAACAAAATATCTAAGAGATCTCAAGCGGCATCAACAAATTGCATTGGGCATGGATAGCTAA 1077 0.3993 MANHTLDPCCLGEKDNGEANKPKKISLGEALNLNPEKGRFSCSSSAHDLRHLELDKERENIASPRGVLEACMKDFDCRPLSTPATTSSSTRAHSNWTNFFRLLKKKSFKRLGSLSHFSAPKLPKWKSRSSRKNDVLSKLYNFNSSWVTFNLSDLRNATNNFDSENIIGRGGFADVYKGCLQDGQLIAVKKLNKGTTDEKTAGFLSELGIIAHVDHPNTAKLVGCCVEGEMQLVFELSTLGSLGSLLHGSDKNKLDWSKRYKIALGIADGLLYLHENCHRRIIHRDIKAENILLTENFEPQIVTLLRGDKYLVESTEARGRRHLQRTFSEELLDVQEYNSTKYLRDLKRHQQIALGMDS* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00339 358 PANTHER OS08G0249100 PROTEIN 47 301 IPR046958 -
Lapu7g00339 358 ProSiteProfiles Protein kinase domain profile. 161 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00339 358 Gene3D Transferase(Phosphotransferase) domain 1 238 321 - -
Lapu7g00339 358 ProSitePatterns Protein kinases ATP-binding region signature. 167 190 IPR017441 GO:0005524
Lapu7g00339 358 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Lapu7g00339 358 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK1 137 236 - -
Lapu7g00339 358 FunFam Os07g0541700 protein 239 323 - -
Lapu7g00339 358 Pfam Protein tyrosine and serine/threonine kinase 164 297 IPR001245 GO:0004672|GO:0006468
Lapu7g00339 358 Gene3D Phosphorylase Kinase; domain 1 123 235 - -
Lapu7g00339 358 SMART serkin_6 161 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00339 358 SUPERFAMILY Protein kinase-like (PK-like) 140 301 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00339 Lapu-Chr7 4215062 4218405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00339 148 293 Receptor kinase-like Gene Family AT1G53430 51.007 3.85e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Lapu7g00339 PK_Tyr_Ser-Thr 1.1e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00339 - - gmx:100781529 459.144