LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g00333	ATGGAGTGCAACAAAGACGAGGCAGTGAGGGCTAGGCAAATGGCCGAAGCTAGAATGCAAAGAGGTGAATTTGTTGAGGCACTCAAGTTTGCTACCAAGGCTAAAAAATTGTATGCTGATGTTGAAAACATTACTCAGATTCTTACCATTTGCGAGGTTCACAATGCTGCGCATAAAAAGCTCTCTGCTACTGACATGGACTGGTATGCAATACTTCAGATTGAAAGATTGGCCGATGAAGCAGTCATAAAGAAACAGTACAGGAGGCTTGCACTGCTACTTCATCCTGATAAGAACAAGTATGCTGGTGCAGAAGCTGCTTTCAAGTTGATTGGGCAAGCCAATGGGGTCTTAAGTGATCAAGCAAAACGTTCTTCGTATGACAGTCAGTTTGGAATCTCTAAGAGAGGTGCTGCGCCTAAATCCACTGCAAAACGTAATGCAGAAAAATGTCAGAAGAGGTCTGAATCACACCAGAACTCAGATGGGAATGTGTTCACTGCAAAACACAATGACAATGCAACAAATTATCAGAAGAAATCTCATCCGAACTCCGCGAATTCCAACAACCAAGCTGGACCGATGACATTCTGGACATCTTGCCAACATTGTAATTTTAAGTTCCAGTACTGCGTACAATATGCGAATGCAAACTTATTGTGTGTGAAGTGTTTGAAGTCATTTAAAGCTCATGTTATTAGTTTTGGTGTCCCACCGTCAATGTTTACTTCAGTAAATATCCAGAAAGAGGCTCCAATTCCTGGTCCCCCGAAACCCGATTCAGAAAGCACTGGTCAGAAACCCGTTCGTAGTACTGCCAGGTTTGTGCGGTCACAATCTACATTTATGAAAAAGTGTGCTGCTGGAGTTGGTGCTCATTGTGAAGGTGAAAAGAGCAAAGATGGCTCTGTTCCTGTATCCGAAAGCCTGGAGTCACAATCCCCAAAAAATGTTGGAAGTAAGAGAGTAAGGCAGTCTGCACCAGATTCAGGAGAAAGATTCAAAGCTAGAAATTGTGGTGAGATGCGAGATGCCAATGTTCGAGAAAATGATCGTGATCATTCAAGAGTTGGTGCAAGGAGATCTTCAAGAAAAAAACAGCATGTTTCATATATGGAAACCTCTGACGATGACGAACTTGAAATTCCTTCCAAAACGCCACGACAAAATGATCCACTTAATGCCGATGACGTTAAGAATAAGACTGTGCCCGCTAGTAATGGATCGTCCAATAGGGACAATCCAGCTACTTCAGCTGCTGGTGTGGCTGATCAGAACAGAGAGAAGATATCCGAGTCAAAAGAGTATAACTTCTCTCCTTTGAATTCAAACGTTCCTTCTGCTTCGAAGATCCTTCCTTGTTTTGACGCAGATTTCAATGATTTCGAAAAGGATAAGGAGGAGAGTTGCTTTGCTGTTAAACAAATATGGGCAGTGTATGATAGCGTTGACGGGATGCCAAGATTTTATGCTATTGTCAAGAAAGTGACTTCCCCTTTCAAGTTGCAGATTACTTGGTTGGAGGCTGATCCGGATAACGAAGATGAACTTGATTGGCAGAAGGCACATTTGCCTATTGCCTGCGGTAAGTTCAGACGTGGAAGTTCTCAGAAAGCTACATCTTGTACTATGTTCTCTCATCAGGTGCGGTGCATAAAAGAAACTGGCAAAGGTTTTTATCTGGTATATCCCAATAAAGGAGAAACTTGGGCAATTTTCAGAGACTGGGATATCAAATGGAGTTCTAATCCAAAAGAACATTTGGAGTATGTCTTTGAATATGTGGAAATCCTATCAGATTTTTCTAAAGACATGGGCATCGCAGTTGCTTATCTGGACAAAGCGAAAGGATTTGTTAGCCTCTTTCAGAGAACTTTGAAGAATGGAGTGGACATGTTTTATGTCCGGCCTAATGAGCTATATAGGTTCTCGCATCAAATTCCTTCTTTTAAGATGTCTGGTAATGAAAGAAAGGGTGTTCCAAGAGGATCCTTTGAATGTGATCCCGCTGCCCTGCCTTTTAGTCTTTTTGAAGTAAGTGATTAG	2046	0.4198	MECNKDEAVRARQMAEARMQRGEFVEALKFATKAKKLYADVENITQILTICEVHNAAHKKLSATDMDWYAILQIERLADEAVIKKQYRRLALLLHPDKNKYAGAEAAFKLIGQANGVLSDQAKRSSYDSQFGISKRGAAPKSTAKRNAEKCQKRSESHQNSDGNVFTAKHNDNATNYQKKSHPNSANSNNQAGPMTFWTSCQHCNFKFQYCVQYANANLLCVKCLKSFKAHVISFGVPPSMFTSVNIQKEAPIPGPPKPDSESTGQKPVRSTARFVRSQSTFMKKCAAGVGAHCEGEKSKDGSVPVSESLESQSPKNVGSKRVRQSAPDSGERFKARNCGEMRDANVRENDRDHSRVGARRSSRKKQHVSYMETSDDDELEIPSKTPRQNDPLNADDVKNKTVPASNGSSNRDNPATSAAGVADQNREKISESKEYNFSPLNSNVPSASKILPCFDADFNDFEKDKEESCFAVKQIWAVYDSVDGMPRFYAIVKKVTSPFKLQITWLEADPDNEDELDWQKAHLPIACGKFRRGSSQKATSCTMFSHQVRCIKETGKGFYLVYPNKGETWAIFRDWDIKWSSNPKEHLEYVFEYVEILSDFSKDMGIAVAYLDKAKGFVSLFQRTLKNGVDMFYVRPNELYRFSHQIPSFKMSGNERKGVPRGSFECDPAALPFSLFEVSD*	682

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu7g00333	681	SMART	dnaj_3	66	123	IPR001623	-
	Lapu7g00333	681	Gene3D	DnaJ domain	50	145	IPR036869	-
	Lapu7g00333	681	ProSiteProfiles	dnaJ domain profile.	67	131	IPR001623	-
	Lapu7g00333	681	MobiDBLite	consensus disorder prediction	129	169	-	-
	Lapu7g00333	681	MobiDBLite	consensus disorder prediction	293	437	-	-
	Lapu7g00333	681	MobiDBLite	consensus disorder prediction	248	271	-	-
	Lapu7g00333	681	MobiDBLite	consensus disorder prediction	400	421	-	-
	Lapu7g00333	681	Pfam	DnaJ domain	67	128	IPR001623	-
	Lapu7g00333	681	MobiDBLite	consensus disorder prediction	326	358	-	-
	Lapu7g00333	681	SUPERFAMILY	Chaperone J-domain	62	130	IPR036869	-
	Lapu7g00333	681	MobiDBLite	consensus disorder prediction	305	324	-	-
	Lapu7g00333	681	CDD	DnaJ	67	120	IPR001623	-
	Lapu7g00333	681	Pfam	Domain of unknown function (DUF3444)	452	656	IPR024593	-
	Lapu7g00333	681	PRINTS	DnaJ domain signature	87	102	IPR001623	-
	Lapu7g00333	681	PRINTS	DnaJ domain signature	69	87	IPR001623	-
	Lapu7g00333	681	PRINTS	DnaJ domain signature	103	123	IPR001623	-
	Lapu7g00333	681	PANTHER	DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN-RELATED	1	680	-	-
	Lapu7g00333	681	MobiDBLite	consensus disorder prediction	142	157	-	-
	Lapu7g00333	681	MobiDBLite	consensus disorder prediction	366	385	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu7g00333	Lapu-Chr7	4160332	4163209	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu7g00333	47	233	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT5G64360	31.746	5.18e-23	100

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu7g00333	-		-	gmx:102662460	928.317