Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00323 ATGAAGCATGAGATAGCGATGGAGAACTCTGAGCTCTTCCACTTCCTCTCAAACACCAATGCTTCTTTCTTTCCTGAACCTGCTGCATCATCAACCATGCAACAAAGCTTCTCTGCTTCCTTTTCTTATCACCCTTTGGAACCATTCAATGCACCACCTCATCAAGATAAAGCCCTTGCTGCTCTCAGGAACCACAAAGAGGCTGAGAAGAGAAGAAGGGAAAGAATCAACTCCCACCTTCATAAGCTTCGCACTCTTCTTCCTTGTAATTCCAAGACCGACAAGGCTTCACTGTTGGCTAAGGTGGTCCAAAGGTTGAAGGAGTTGAAGCAGCAGATGTCTAAAATAACCCAATATTCCGACACGTTTCCTTCGGAGACCGACGAGATCTCTGTTCTGTCCACCGGTGACGGTGACGAGAGTGGCGGTGACGGACGACTCATATTCAAGGCCTCTTTCTGCTGTGAAGACCGCTCCGATCTCATCCCTGAGATCATCCAAATCCTCAAGTCTCTGCACCTCAGAACGCTCAAAGCCGAAATCGTAACGCACGGTGGAAGAACCCGCAACGTTCTCGTGGTGGCCACCGACAAAGATCATAGCGTTGACTCAATCCACTTCCTGCACAACTCGTTGAACTCTTTGCTACAACACAACGGAACATCCAAACGACGCCGTGTCACCGGCCCAAACTTCATCTCTTAA 705 0.4879 MKHEIAMENSELFHFLSNTNASFFPEPAASSTMQQSFSASFSYHPLEPFNAPPHQDKALAALRNHKEAEKRRRERINSHLHKLRTLLPCNSKTDKASLLAKVVQRLKELKQQMSKITQYSDTFPSETDEISVLSTGDGDESGGDGRLIFKASFCCEDRSDLIPEIIQILKSLHLRTLKAEIVTHGGRTRNVLVVATDKDHSVDSIHFLHNSLNSLLQHNGTSKRRRVTGPNFIS* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00323 234 Coils Coil 99 119 - -
Lapu7g00323 234 Gene3D - 55 120 IPR036638 GO:0046983
Lapu7g00323 234 SMART finulus 66 115 IPR011598 GO:0046983
Lapu7g00323 234 CDD bHLH_AtAIG1_like 55 132 - -
Lapu7g00323 234 FunFam transcription factor bHLH30 55 118 - -
Lapu7g00323 234 PANTHER TRANSCRIPTION FACTOR BHLH30 38 229 IPR045847 GO:0003700|GO:0006355
Lapu7g00323 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Lapu7g00323 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 130 IPR036638 GO:0046983
Lapu7g00323 234 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00323 Lapu-Chr7 3957681 3958557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00323 43 222 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 63.043 2.57e-68 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu7g00323 HLH 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00323 - K22484 pvu:PHAVU_007G243000g 358.221