Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00303 ATGGGGAGGGGGAAGATTGAGATTAAGAAAATTGAGAATTTGAACAGCAGACAGGTTACCTTTTCCAAGAGGAGAAATGGTTTGCTGAAGAAGGCCAAAGAATTGTCTGTTCTATGTGATGCTGAGGTTGCTGTCATCATATTCTCTAGCACTGGCAAGCTTTATGAGTTTTCAAACACAAGCATGGAACATACCCTTTCAAGGTATAGCAAAGGCACGGAATTGGATTCTGCAGAACAACCTATGGATGTGCCCCCAAAAGATGTTATGATTATGGAGCCTGATACTAACCTTTTGAAGGATGAAATAACAAAGCTTCGATCAGCATACTTAAAGATGACGGGTAAGGAGCTAGATGGATTGAGCCTTAAAGAACTGCAGCACCTAGAAAATCAACTGAGTGAAGGGATACTAGCTGTCAAAGACAAGAAGGAACAAGCACTTGTAGAACAGCTTAGGAGGTCCAGGATACAGGAGCAAAAAGCTGTGCTGGAAAATGAAGTTTTGCGCAAACAGCTTGAAGAGATACAAAACAAAACAAAGACACAGTTCCTTGAATTCAGTTCTTTGGATAGGACATTTTCCAAGAACGGTTCAAAATCTCTTTTCAATTGTGCTTCAGAGGAAAATGACCATTCGGACACTTCTTTGCAGTTAGGGTATGTCATCATGACTCCCTTTTCTACCAGTCATGTTTTCATTGAAACCTATTTAGAAACTGCAATGTTGCAGCCCTACAAAATGCAATAA 750 0.4027 MGRGKIEIKKIENLNSRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYSKGTELDSAEQPMDVPPKDVMIMEPDTNLLKDEITKLRSAYLKMTGKELDGLSLKELQHLENQLSEGILAVKDKKEQALVEQLRRSRIQEQKAVLENEVLRKQLEEIQNKTKTQFLEFSSLDRTFSKNGSKSLFNCASEENDHSDTSLQLGYVIMTPFSTSHVFIETYLETAMLQPYKMQ* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00303 249 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Lapu7g00303 249 Pfam K-box region 95 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu7g00303 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lapu7g00303 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 154 - -
Lapu7g00303 249 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lapu7g00303 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lapu7g00303 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lapu7g00303 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lapu7g00303 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lapu7g00303 249 FunFam MADS-box transcription factor MADS-MC 13 83 - -
Lapu7g00303 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lapu7g00303 249 Gene3D - 14 87 IPR036879 GO:0003677|GO:0046983
Lapu7g00303 249 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Lapu7g00303 249 Coils Coil 126 146 - -
Lapu7g00303 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lapu7g00303 249 Coils Coil 154 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00303 Lapu-Chr7 3684061 3687324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00303 1 220 MADS-box Gene Family AT5G13790 48.879 1.88e-62 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lapu7g00303 K-box 1.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00303 - - gmx:100792278 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00303 7 3684061 3687324 Lapu7g00303 7 3684061 3687324 ECH