Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00287 ATGGGAACTCCCGAATTCCCAGATCTGGGAAAGCACTGTTCGGTCTCTGATTGCAAGCAGATCGATTTCTTGCCCTTTACCTGCGATCGCTGCCACCAGGTGTATTGTTTGGAGCACAGAAGTTATATTAAACATCAGTGTCCAAAAGCTGACAAGAAAGATGTTACTGTAGTTATATGTCCACTTTGCGCCAAAGGAGTTCGCCTAGTTCCTGATCAAGATCCAAATATAACTTGGGAGAATCATGTCAACACTGATTGCGACCCATCAAACTATGAGAAAGTCACGAAGAAGAAAAAATGCCCTGTCCCAGGATGCAGAGAGATATTAGGATTCTCAAACACAATTAAGTGCAGGGACTGCACGGTAGACCATTGTTTAAAGCATCGGTTTGGACCTGATCATAAATGTCCTGGTCCCAGAAAAATGGAAACAAGTTTTTCATTTAGGAATCTTTTGAATGTGAGTAAAAAGCAGGAGTCCAAACCCCAGTCAAGTTCGACTGCATCATCTAGATGGTCTACAGGCTTTCTTAATGCAGTTTCTAATATTCGAGCCTCAGCAGAGGCTGGTGTGTCAAAGTTGAGTGAAGTTAACCAAGGCTGGTGGACTGCATCAACTGGGGTGGGACCAAGCGGTAGCAGTGGTCAAGTGGAGCAATGCCCTCAGTGTGGTGTCAAGTTTTCCTCTGTTACTACTTTGGTAGACCATGTGCAAAAAGTTCATGAAAGGAGTGGCAACCGATCTGGAGCAAAGGTTACAATTGATGCTTGCCCTAAGTGTAGTAGAGGATTTCGGGATCCTGTTGCCCTTGTGGAACATGTTGAGAAGGATCATGGTGGCAGTTCTAGATCATAG 858 0.4452 MGTPEFPDLGKHCSVSDCKQIDFLPFTCDRCHQVYCLEHRSYIKHQCPKADKKDVTVVICPLCAKGVRLVPDQDPNITWENHVNTDCDPSNYEKVTKKKKCPVPGCREILGFSNTIKCRDCTVDHCLKHRFGPDHKCPGPRKMETSFSFRNLLNVSKKQESKPQSSSTASSRWSTGFLNAVSNIRASAEAGVSKLSEVNQGWWTASTGVGPSGSSGQVEQCPQCGVKFSSVTTLVDHVQKVHERSGNRSGAKVTIDACPKCSRGFRDPVALVEHVEKDHGGSSRS* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00287 285 ProSitePatterns Zinc finger C2H2 type domain signature. 221 242 IPR013087 -
Lapu7g00287 285 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 5 247 - -
Lapu7g00287 285 Pfam AN1-like Zinc finger 13 52 IPR000058 GO:0008270
Lapu7g00287 285 Pfam AN1-like Zinc finger 101 140 IPR000058 GO:0008270
Lapu7g00287 285 SMART c2h2final6 256 279 IPR013087 -
Lapu7g00287 285 SMART c2h2final6 219 242 IPR013087 -
Lapu7g00287 285 SUPERFAMILY AN1-like Zinc finger 4 59 IPR035896 -
Lapu7g00287 285 SUPERFAMILY AN1-like Zinc finger 93 146 IPR035896 -
Lapu7g00287 285 ProSiteProfiles Zinc finger AN1-type profile. 95 145 IPR000058 GO:0008270
Lapu7g00287 285 SMART AN1_Zf_4 13 52 IPR000058 GO:0008270
Lapu7g00287 285 SMART AN1_Zf_4 101 142 IPR000058 GO:0008270
Lapu7g00287 285 ProSiteProfiles Zinc finger AN1-type profile. 7 55 IPR000058 GO:0008270
Lapu7g00287 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 219 247 IPR013087 -
Lapu7g00287 285 Pfam C2H2-type zinc finger 220 242 - -
Lapu7g00287 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 256 284 IPR013087 -
Lapu7g00287 285 ProSitePatterns Zinc finger C2H2 type domain signature. 258 279 IPR013087 -
Lapu7g00287 285 Gene3D Classic Zinc Finger 196 282 - -
Lapu7g00287 285 FunFam AN1-type zinc finger protein 2B isoform X1 3 64 - -
Lapu7g00287 285 Gene3D - 86 172 IPR035896 -
Lapu7g00287 285 Gene3D - 2 60 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00287 Lapu-Chr7 3470794 3474144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00287 1 285 C2H2 Transcription Factor Family AT2G41835 63.542 3.37e-127 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g00287 zf-AN1 4.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00287 - - gmx:100786272 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00287 7 3470794 3474144 Lapu7g00287 7 3470794 3474144 ECH
Lapu1g00158 1 7102840 7104559 Lapu7g00287 7 3470794 3474144 PCT