Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00277 ATGATGAACCACTTGACCATTGAGACGGAGGATTCTTTTGCAAGCTTGCTTGAGCTTGCTGCTAACAATGATGTTGAAGGTTTTAAACGAATGATTGAGAGGGATCCTTCCTGTGTAGACGAGGTAGGACTATGGTACAGTCGCCAGAAGGGATCTAGGCGGATGGTCAATGAGCTCAGAACCCCATTGATGGTTGCTGCTACTTACGGGAGCATTGATATTTTGGATATGATTCTCTCACTTTCTGGCTATGATATTAATAAACCTTGTGGCCTTGACAAGAGCACTGCTCTTCATTGTGCCGCTTCAGGCGGGGCTGAAAATGCTGTTGATGTTGTTATATTGCTTTTAGCAGCAGGGGCTGATCCAAACTCTGTGGATGGAAATGGTCATCGTCCAGTTGATGTCATTGTTGTTCCTCCCAAGCATGAATCTGTTAGAAACAGTCTTGAAGCACTTCTTCAAACTGATGACTCCATTGCAGCGTGTAATCTCAGGGTGATCACGGCCCCATCAAATGCATATTCTCCACCTTTGTCAACTTCACCCGACAACGGGTCTCCTTCTGCACCAGATTTCCAATTGAAGTCAAAGTTAAATGATGGCTTTGTTTCTTCTGCATCAGAGAAGAAAGAATATCCCGTTGATCCATCTCTTCCTGATATCAAGAATAGCATATATTCAACGGATGAATTCCGAATGTATTCTTTCAAAGTCCGACCTTGTTCACGGGCTTATTCACATGATTGGACTGAATGCCCTTTTGTTCATCCAGGGGAGAATGCTCGGAGAAGGGACCCAAGAAAGTACCACTACAGCTGTGTCCCTTGTCCTGATTTTCGGAAGGGTGCTTGTCGACGAGGAGATATGTGTGAATATGCTCACGGAGTTTTTGAGTGCTGGCTGCATCCAGCACAGTATCGTACTCGTCTTTGCAAGGATGGGACAAGCTGCTCCAGAAGAGTTTGCTTTTTTGCTCACACTGCTGAGGAGCTTCGGCCATTATATGTTTCTACTGGTTCTGCTGTACCATCTCCTCGTTCAAGCACATCTTCTGCAATTGAATTTGCTGCAGCTATGAACATGTTACCTGACTCTCCTTCCTCAATGTCTGTCATGTCTCCTTCACCGTTCACTCCACCCATGTCACCCTCTGCCAATGGCATCTCACACTCATCCCTTGGCTGGCCCCAACCAAATGTCCCAGACTTGCATCTTCCGGGGAGCAATCTTCATTCCAGTCGTTTGAGATCTTCATTCAATGCCAGAGATATTCCAATGGATGACTTTGACTTGTTGCCTGAGTACGATGCTCAGCAACAGCAACAGCTCCTTAACGAGTTCTCTTGCCTCTCTAAACAGCCTAATGCTATGAACCGCTCCGGTCGCATTAAAACCTTGACGCCTTCAAATCTTGATGATCTATTTTCTTCTGAGAGTTCATCACCTCGGTTTGCTGATCCAGGATTGGGTTCGGCTGTTTTTTCTCCAACACATAAATCAGCTATTCTTAATCAATTTCAGCAGCAGCAAAGCTTGCTGTCGCCTGTGAACACAAGCTTTTCTTCTAAAAGTGTTGAGAATCCTTTATTGCAGGCTGCCTCATTTGGGGTTCAAGCATCAGGAAGGATGTCTCCTCGGAATGTGGAACCTATTTCTCCAATGAGCTCTCGGATTTCTGTGCTAGCTCAACGTGAGAAGCAGCAACAATTCCGAAGCCTTAGCTCCAGGGAACTTGGCTCCAACTCTGCTAATGTTGCTGCAGCTGCTGCTGGGTCCCCAGTCAATTCTTGGTCGAAATGGGGACCCTCCAATGGTACATTGGATTGGGCTGTCAATGCTGACGAGTTAAGGAAACATCGTAGATCATCTTCGTTTGAGCACGGGAATAATAGTGAGGAGCCTGATTTCTCATGGGTCCAGTCACTTGTTAAAGAATCTCCAACTGAGATTAAGGAGAATTCAACGACAACTGTGTCAAGTGGTGCAGCAGCTGGATCCTCCAGTGAGGTATCAAATATGAGCACACAACTGGACTCTGTTGATCATGCCGTGTTAGGAGCATGGCTTGAACAAATGCAGCTCGATCTTGTGGCTCAGCAAAATTAA 2109 0.4585 MMNHLTIETEDSFASLLELAANNDVEGFKRMIERDPSCVDEVGLWYSRQKGSRRMVNELRTPLMVAATYGSIDILDMILSLSGYDINKPCGLDKSTALHCAASGGAENAVDVVILLLAAGADPNSVDGNGHRPVDVIVVPPKHESVRNSLEALLQTDDSIAACNLRVITAPSNAYSPPLSTSPDNGSPSAPDFQLKSKLNDGFVSSASEKKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSSAIEFAAAMNMLPDSPSSMSVMSPSPFTPPMSPSANGISHSSLGWPQPNVPDLHLPGSNLHSSRLRSSFNARDIPMDDFDLLPEYDAQQQQQLLNEFSCLSKQPNAMNRSGRIKTLTPSNLDDLFSSESSSPRFADPGLGSAVFSPTHKSAILNQFQQQQSLLSPVNTSFSSKSVENPLLQAASFGVQASGRMSPRNVEPISPMSSRISVLAQREKQQQFRSLSSRELGSNSANVAAAAAGSPVNSWSKWGPSNGTLDWAVNADELRKHRRSSSFEHGNNSEEPDFSWVQSLVKESPTEIKENSTTTVSSGAAAGSSSEVSNMSTQLDSVDHAVLGAWLEQMQLDLVAQQN* 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00277 702 ProSiteProfiles Ankyrin repeat region circular profile. 93 127 - -
Lapu7g00277 702 Pfam Ankyrin repeats (3 copies) 50 127 IPR002110 GO:0005515
Lapu7g00277 702 SMART ANK_2a 11 40 IPR002110 GO:0005515
Lapu7g00277 702 SMART ANK_2a 58 88 IPR002110 GO:0005515
Lapu7g00277 702 SMART ANK_2a 93 125 IPR002110 GO:0005515
Lapu7g00277 702 SUPERFAMILY Ankyrin repeat 16 138 IPR036770 -
Lapu7g00277 702 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Lapu7g00277 702 SMART c3hfinal6 271 297 IPR000571 GO:0046872
Lapu7g00277 702 SMART c3hfinal6 306 329 IPR000571 GO:0046872
Lapu7g00277 702 MobiDBLite consensus disorder prediction 648 675 - -
Lapu7g00277 702 FunFam Zinc finger CCCH domain-containing protein 66 229 297 - -
Lapu7g00277 702 PANTHER UNKEMPT FAMILY MEMBER 18 647 IPR045234 -
Lapu7g00277 702 ProSiteProfiles Zinc finger C3H1-type profile. 276 298 IPR000571 GO:0046872
Lapu7g00277 702 Gene3D - 273 334 - -
Lapu7g00277 702 Gene3D - 9 160 IPR036770 -
Lapu7g00277 702 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 296 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00277 Lapu-Chr7 3286905 3291070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00277 8 696 C2H2 Transcription Factor Family AT5G12850 53.125 0.0 690
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu7g00277 Ank_2 3.2e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00277 - - gmx:100813554 1220.3