Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00262 ATGTTCCCTTCAGTTATGTCCAATTCCAATTCCTTGTCCGAAGAGGCCACTGTCTCCTGTGGTACAAGAATCGCTGGACTCAGTCACGTAGTCACAACAATCATTTCTCCACAACAGCCTCAAAAGATCAAGAAAAAGAGAAACCTCCCTGGAAACCCTGACCCAGATGCTGAAGTGATTGCTTTATCACCGAAGACTCTTCTAGCTACCAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAACCTTCAGCTTCATAGGAGAGGGCATAACCTCCCATGGAAGCTGAAGCAAAGGAACAACAAAGAGGTGAAAAAGAAAGCCTATGTTTGTCCTGAACCTTCATGCGTTCACCACAACCCCTCAAGGGCTCTGGGGGACCTCACAGGAATTAAGAAACATTACTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATCTATGCGGTTCAGTCAGATTGGAAAGCTCACTCCAAAACCTGTGGTACTAGAGAATATAGATGTGATTGTGGAACTCTTTTTTCCAGGAAGGACAGCTTCATAACTCACAGAGCATTCTGTGATGCATTGGCCGAAGAAAGTGCTAGACTGTCAGCAAACCAACTAGCCAGCAGCACCACAAACCCATTAGTCCAATCCCTCTTCCTTCTTCCAACCGAACAACACAACAACACCAACTTCATCAATCCCTGGGACCCAAACCCTAACCCTAGCAACCTTACCACCCTCCACAACACCATAAAACCTGAATCTCACAACTTCCACACCCCAATCTACAACCACAGCAGCAACATCTCTTCTCCTTCGTTGCTTCTTCATCAACCCCCCAAGACCATGATAACCTCACCCTATCGTGACCTCCACGTCCGCCCCTCCAATGCTGCCACGTCACCGCACCTCTCCGCCACTGCGCTGCTCCAGAAGGCTGCAACCTTCGGCGCCGCCGCTATCACGGTCCCCACTAACGTGACTCCGATCAGCATGGCCGAGTTGGGAACCGTGTCGACTCAGCTCGACTCGGTGCCACCCGAACGCTACTTTAACATGAGGGGCCTCAAGAATAGCGACGGTCTCACCAGGGACTTTCTTGGACTCACCAATGGCGGCGCGGTTGACGTTAGCATCGACGTCAAGGACATGCTAACGTTCGCGGGAGGAAGCGTAGAGTACAACCATTACAACCACCAACCCTACGACCACCATCATAATCATAGTAACTCGCTTTTCAAGCCACAACATGGGTTTGGATTCCTTGGGACAACCACTGGCCCCGAATCCTGGGGAAATTGTGAGTGA 1326 0.4962 MFPSVMSNSNSLSEEATVSCGTRIAGLSHVVTTIISPQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLASSTTNPLVQSLFLLPTEQHNNTNFINPWDPNPNPSNLTTLHNTIKPESHNFHTPIYNHSSNISSPSLLLHQPPKTMITSPYRDLHVRPSNAATSPHLSATALLQKAATFGAAAITVPTNVTPISMAELGTVSTQLDSVPPERYFNMRGLKNSDGLTRDFLGLTNGGAVDVSIDVKDMLTFAGGSVEYNHYNHQPYDHHHNHSNSLFKPQHGFGFLGTTTGPESWGNCE* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00262 441 Gene3D Classic Zinc Finger 52 121 - -
Lapu7g00262 441 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 401 IPR031140 -
Lapu7g00262 441 Pfam Zinc finger, C2H2 type 73 95 IPR013087 -
Lapu7g00262 441 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Lapu7g00262 441 FunFam protein indeterminate-domain 12-like 52 120 - -
Lapu7g00262 441 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Lapu7g00262 441 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Lapu7g00262 441 Gene3D Classic Zinc Finger 142 207 - -
Lapu7g00262 441 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Lapu7g00262 441 SMART c2h2final6 73 95 IPR013087 -
Lapu7g00262 441 SMART c2h2final6 114 144 IPR013087 -
Lapu7g00262 441 SMART c2h2final6 149 169 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00262 Lapu-Chr7 3053513 3057422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00262 17 410 IDZ Gene Family AT4G02670 52.174 2.05e-125 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu7g00262 zf-C2H2 0.0043 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00262 K25870 - gmx:100780056 762.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00262 7 3053513 3057422 Lapu1g02125 1 35305668 35310483 PCT