Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00261 ATGAACTATATGTATCCAGTGAAAGAAGAATGCTTGGAATCATCAGCAGCAGCATCATATCAATTAGGTAGTGAGTATTCACCAAAGCCAATTGAGGGACTTCATGACACCGGACCCCCACCATTCCTCACCAAAACTTTTGATGTTGTGGATGACCCAGTTACCAACCACGTCATTTCTTGGAGCAGAGACGGCACAAGCTTTATAGTCTGGGATCCACTTACCTTCTCTGCAAGTCTCCTTCCCAGATACTTCAAGCACAACAATTTCTCAAGCTTTGTCCGGCAATTAAACACTTACGGTTTTAGGAAAATTGATCCGGATAGATGGCAGTTTGCAAATGAAGGATTCATCAGAGGGCACAAGCAAATGTTAAGAAGCATAAGGAGAAGGAAGGCACCTTCCCAACTAACACAAGGTCACCACTTTGTTGAAGTTGGACGTTTTGAATTAGACAAAGAGGTTGATCGTTTGAAGCATGACAAGGTAGTGTTGATGATGGAGCTTATGAATCTAAGAGAGCAGCAGCAGAAAGCCAGAATGTACATTAAGGAGATGGAGCAAAGGTTACAAGTGACTGAAATCAAGCAGAAACATATGATGGCTTTCTTAGCTAGAGCCATAAAAAATCCTGCCTTCATAAACCAACTCCAACAGAAAGAGAAGAGAAAGGATCTTGAAGAAGCCTTGACCAAAAAGAGAAGGCAAGTTGAGCAGGGAGATAGAGGTATTGGAGAATCAAGTAGTGGGGATGAAGAAAGGAGCAGTGTTAAAGTTGAGGCCTTAGAATTTGGGGATTGTAATTGTGATTTTGGAGTGTCAGAGTTAGAAAAGTTAGCTATGGAAATGCAGGGGTTTGGAAAGGGTAAGATAGACCCGGACGTAGAACCTGAGGGACTAGAATCACAAGAGAGGCTGGATAGAGTACTTGATGAAGAGTTTTGGGAAGAACTACTGATCAGTGAGACATTTGAGGTCGATTAG 984 0.4228 MNYMYPVKEECLESSAAASYQLGSEYSPKPIEGLHDTGPPPFLTKTFDVVDDPVTNHVISWSRDGTSFIVWDPLTFSASLLPRYFKHNNFSSFVRQLNTYGFRKIDPDRWQFANEGFIRGHKQMLRSIRRRKAPSQLTQGHHFVEVGRFELDKEVDRLKHDKVVLMMELMNLREQQQKARMYIKEMEQRLQVTEIKQKHMMAFLARAIKNPAFINQLQQKEKRKDLEEALTKKRRQVEQGDRGIGESSSGDEERSSVKVEALEFGDCNCDFGVSELEKLAMEMQGFGKGKIDPDVEPEGLESQERLDRVLDEEFWEELLISETFEVD* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00261 327 Pfam HSF-type DNA-binding 42 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu7g00261 327 Coils Coil 216 236 - -
Lapu7g00261 327 ProSitePatterns HSF-type DNA-binding domain signature. 81 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu7g00261 327 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 28 242 IPR027725 -
Lapu7g00261 327 FunFam Heat shock transcription factor 1 35 132 - -
Lapu7g00261 327 Coils Coil 155 189 - -
Lapu7g00261 327 Gene3D - 34 132 IPR036388 -
Lapu7g00261 327 MobiDBLite consensus disorder prediction 230 257 - -
Lapu7g00261 327 SUPERFAMILY "Winged helix" DNA-binding domain 38 131 IPR036390 -
Lapu7g00261 327 PRINTS Heat shock factor (HSF) domain signature 42 65 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu7g00261 327 PRINTS Heat shock factor (HSF) domain signature 93 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu7g00261 327 PRINTS Heat shock factor (HSF) domain signature 80 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lapu7g00261 327 SMART hsfneu3 38 131 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00261 Lapu-Chr7 3033376 3035403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00261 28 319 HSF AT3G22830 50.000 3.81e-106 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lapu7g00261 HSF_DNA-bind 9.7e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00261 K09419 - gmx:100811945 513.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g02126 1 35327405 35334628 Lapu7g00261 7 3033376 3035403 PCT