Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00254 ATGGAGCAGTATGAAATTCTAGAACAGATTGGAAGAGGCTCTTTTGCTTCTGCTCTACTTGTCAGACACAGGCACGAAAACAAGAGGTATGTTCTTAAGAAGATCCGGCTTGCCCGCCAGACGGACAGAATCCGTAGATCTGCTCACCAGGAGATGGAGCTAATCTCTAAAGTTCGCAACCCATTTATCGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCGTCATTGGCTATTGTGAAGGAGGAGATATGACTGAAGCTATTAAAAGGGCCAATGGCGTACATTTCCCCGAAGAGAGGCTCTGTAAGTGGCTGGTTCAACTGTTGATGGCACTTGATTACTTGCATGCAAATCATATTCTTCATCGTGATGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATTCGTCTAGGTGACTTCGGTCTAGCTAAAATGTTGACATGCGATGATCTTGCATCCTCGGTTGTTGGGACTCCAAGTTATATGTGCCCCGAACTTCTTGCTGATATACCCTATGGTTCTAAATCCGATATCTGGTCTTTGGGATGCTGTGTGTATGAAATGGCTGCTCACAAACCAGCTTTTAAAGCTCTTGATATGCAAGCACTGATTAACAAAATAAACAAGTCATTAGTGGCTCCACTACCAACAGTGTATTCTGGTTCTTTTCGGGGGCTGGTTAAGAGTATGCTGCGGAAGAATCCAGAGCTTCGGCCCAGTGCTGCAGAGTTACTAAATCATCCGCATCTTCAACCTTACATTCTTAAAATTCACTTGAAATTAAATAACCCCAGAAGAAGTACTTATCCATTTCAATGGTCTGATTCAAACTATGTAAGGAGGACTCGATTTGTTGAGCCAGATTCTGTTTCTACTCTTTCTGGCAGAGGTAAAAGATTGTCATTCAGTAATGACAGGGCGTTGAATCCTAGTATTTCTGGAACTGAACTAGGCTCTTTGTGTTCTACTCAAAGAGGTCAAGGATTCTCTACTTGTTCAAAAGAGAAACATTACGAACTATCTGTTGGTTGTGTTCGTGAAGAATGCAATTCTAACACGTCAAGAGATACAAAGTCCTTAACTGTTGATAGGATGCCAAGATTGAGAACAGCTAAGGAATACGCCACTCCCCGAAGGCAGACAATACCATCAAAGACATCCCATACTGGTTCCAAGCGTGAGTTACTTCCAGCATCTTCCACTCAAGGTGTTAAATTTACCCCACCATCTCGCAGAGCTTCCCTTCCACTGCCTACCAGAACCATGGGTATGAGCACCCCATATAGAGCTAATGTTGGTCTTCTTCAAGGCGTGGACTCCCCTGATATTTCTGTCAATGCACCGCGAATTGACAAGATTGCCGAATTCCCTCTAGCCTTATGTGAGGATTCTCTCTTTCCTGTTTGTGGAACTTCATCAACCTCGGCTCAGTGTTCTTCTGGTTCCCCAAAGACTGCCGACTGCTTAATCACGAAAGACAAGTGTACAATCCAAGTTGTGGACAAAGTCAGTGTCCCTTCAAGTGCACAATCCCCAAAGAGTGCTGCTCCAGTTTCTCATGGCAATGAATGTTCTGTGCATGCTGTTTCAAGCCACTTCTCTGCCGAGTCTTGCCAACGCAGGTTTGACCCCTCGTCTTACCAGCAACGTGCAGAGGCTTTGGAGGGTTTGCTTGAGTTCTCTGCTCGGCTCCTACAGCAGCAGAGGTTTGAAGAACTTGGGGTGTTGTTGAAGCCATTCGGTCCAGAGAAGGTTTCCCCCAGAGAGACAGCTATTTGGTTGGCTAAGAGCTTCAAAGAAACTGTGGCCTAA 1836 0.4434 MEQYEILEQIGRGSFASALLVRHRHENKRYVLKKIRLARQTDRIRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIVIGYCEGGDMTEAIKRANGVHFPEERLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTCDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMAAHKPAFKALDMQALINKINKSLVAPLPTVYSGSFRGLVKSMLRKNPELRPSAAELLNHPHLQPYILKIHLKLNNPRRSTYPFQWSDSNYVRRTRFVEPDSVSTLSGRGKRLSFSNDRALNPSISGTELGSLCSTQRGQGFSTCSKEKHYELSVGCVREECNSNTSRDTKSLTVDRMPRLRTAKEYATPRRQTIPSKTSHTGSKRELLPASSTQGVKFTPPSRRASLPLPTRTMGMSTPYRANVGLLQGVDSPDISVNAPRIDKIAEFPLALCEDSLFPVCGTSSTSAQCSSGSPKTADCLITKDKCTIQVVDKVSVPSSAQSPKSAAPVSHGNECSVHAVSSHFSAESCQRRFDPSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLAKSFKETVA* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00254 611 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 567 - -
Lapu7g00254 611 Gene3D Transferase(Phosphotransferase) domain 1 84 272 - -
Lapu7g00254 611 FunFam Serine/threonine-protein kinase Nek3 86 332 - -
Lapu7g00254 611 MobiDBLite consensus disorder prediction 386 432 - -
Lapu7g00254 611 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00254 611 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lapu7g00254 611 SUPERFAMILY Protein kinase-like (PK-like) 1 311 IPR011009 -
Lapu7g00254 611 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00254 611 MobiDBLite consensus disorder prediction 386 416 - -
Lapu7g00254 611 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00254 611 CDD STKc_Nek 3 258 - -
Lapu7g00254 611 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Lapu7g00254 611 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lapu7g00254 611 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00254 Lapu-Chr7 2938564 2944950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00254 10 289 MAP Kinase Kinase Kinase AT1G53570 29.000 1.01e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lapu7g00254 Pkinase 1e-62 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00254 7 2938564 2944950 Lapu7g00254 7 2938564 2944950 ECH
Lapu1g02130 1 35400394 35408195 Lapu7g00254 7 2938564 2944950 PCT