Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00231 ATGGAGACTAGTGGCAAGATGGAAGACTATGAAGTGATTCAGCAAATTGGAAGAGGAGCACTTGGTGCAACTTTTCTTGTTCTACACAAGATTGAGAACAAGAGGTATGTGCTGAAGAAAATTCGCCTGTCCAAACATGCTGACAAATCCAAAGTGACAGCACAACAAGAGATGGACCTGATAGCTAAACTAAATTACCCTTATATTGTGGAGTACAAAGATGCTTGGGTGGAAAAGGAGGATTACGTATGCATTATAACCGGCTATTGTGAAGGGGGTGACATGGCTGCGAATATAAAGAAAGCTCGGGGATCTTATTTTTCGGAGGAGAAAGTCTGCAAGTGGTTGACTCAGTTGTTACTAGCTGTGGACTACCTTCATTCCAATCGGGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGAAAGTAACATTCGTCTAGGTGAATTTGGTCTTGCGAAGCTTCTCAATACTGAAGACCTTACTTCTTCGGCTGTTGGAACTCTAAACTACATGTGTCCTGAGGCCTTTGCTGGTATGCCTTACGGTTATAAATCTGATATGTGGTCACTTGGTTGCTGCATGTTTGAAATTGTTGCACATCAACTAGCATTTCGTGCTCCAGACAGGGCTGGACTTATCAATAAAATAAATAGATGCTCCATTTCTCCAATGCCAATTGTTTACTCGTCCACACTGAAACAACTTATCAAGAGCATGCTAAGGAAAAACCCAGAACATAGACCAACAGCATCTGAATTATTAAGGCATCCTCATTTACAACCTTATGTTCTACGCTGTCGAAATGCTTCATCTATTTATCTACCAGTACATCTTATAAATAGTAACTCCCCAAAGGATAAAACTAAAAACAAATCCAGTGATAGCAAAGACCATTGGGACAAGGAGGCAGGATTGGCAGGATTAGTAAATCGCTTGGAGCGAATTTATCCATTTGAGGGAAATGGAGATGTACATACACGGAACCAGCATAATGAGGGCAAGGTAGCAGTGCCAACCAGTGCCAAAGACTTTGAGACCAAAATGGTTGATTCTACAAGCTACACTCTGGAATTTTCTACAAGTATTAGTGGCTCAAAAGATGGCTCTACAACATCTGAATCAACCGTTTGCAGTGTGAGCAAGGAAGGAGATTTTAAAAATAGACTTGCAAGGGACACAGCTGACAGTGAGATCACCTCAAGGAGTACAATGGATTGTGTGCATGAAGAACAAGGACTTACTACCCTTAAGTCATATGCAATTGACATAAATACAGTTATTAAAAATGTTGAAGATATTTTTTCCAATGAAGATTTCAATACAGATGAAGCACTGAGTGAAGGTGCTAAACCTAGGGATTCCAGTAAATCCACAGTGTCCAGTGAAGACAGCAACGGCAATGATAAAGACGGGTCCATTGATGAGATCATGTCAAAGAGTACCCTTGATTCTGTGCATGAAGAACAAGGATTTATGGCTGATCATTTTGGAAAGTCAGATGTGATTGACCCAAGTGCAGTATCTACAGAAGTTGAAGATAATTTTTCGAATCAAGGTTTTGATAAAATGGAAGCAGAGAGTGAAAATGCCAAACCTGAGGACTCCAGAAAATTAACAGTGTCCATTGAAAACAGCAAAGGTAATGATAATGATGGGTCCATTGACGACATCACCTCAAAGAGTATTATAGAATCTGTGCATGATGAACAAGAATTTACTGCTGAACATTTTTCAAACTCAGATGTGATTGACACGAATCCAGTGGCTACAAAAGTTGAAGATAATTTTTGCAATGAAGCATTTGACCAAACTGAAACAGATAGGGAAAAGGCCAGACGTGAGGACTCCATAATATCAGAAGTGTACAAAGAAAACAGTGGTAGTGATGATAATGACATGTCCATTAATGAGATCAGATGGAAGAGTACACTCGATTCTGTGCATGAAGAGCAATGGTTTATAGCTGAACATGTTCAGAAGTTAGATGTTGTTGACATAAAAGCCACGGCTTCAAAAGATGTGGACAAAATTTCTAATGAAGCTTTTGATAAAGCTGAAGCACAGAGGGAAGATGCCAAACTTGAGTGCTCCAGTAAATCAATAATTTCCTATGATAACAGCAATGGTAATGATGAAGATGGATCTTGTGGTGAGATCACATCAAAGACTGTGCTAGAATCTGTAGGTGAAGAGCAAGGACTCACTGCTGAGCATTTTCAGAAGTCTGATGCAATTGGCATAAATGCAGTGACTACTGAAGTTGAAGATAAACTTTCCAATGAAGGCTTTGATAAAGCTGAATCACAGGAGAAAGATGCTAAACTTGAGGACTCAATTAAATCTTTGTCCAGTGAAGGCAGCAGCAGCAGTGATAAAGATGGGTCCATTGATGAAGAAAAGTCGTCCTCTCCAATGGCACCTGTTAAAGTTGAACATGACAGTGAAACTGGAAGCAGCTTGAAGGAAAGTGAGAACCCTGAAGCATTTAAAGAAGACTCACGCATGGACAGCTTGATGTCTGATAGTAAGGATACGCATCCAGGTAAGGATGGAAACAGAGAAGACACACGCACAATCAGTTGCTCAACGTGTAAAGAAGACAACAATGCTGTTGTGGCAGATAAGCCAGCAAATGGAATTTCATTTAGGAAACGCATTTCAGGAGGCAGTAATACTTCCTGCCAGCAAAGAGCTGATGCTCTGGAATCTCTACTTGAGTTATGTGCACAGCTTCTTCAGCAAGGAAAACTTGAAGAGCTTGCTGCTGTGCTAAGACCATTTGGAGAAGATGCCGTATCGGTGTCATCCAGAGAAACAGCAATATTGCTTACAAAAGGCCTGTTGGCCTCACAAAAACTTAATCCTGAAACGTAG 2889 0.4043 METSGKMEDYEVIQQIGRGALGATFLVLHKIENKRYVLKKIRLSKHADKSKVTAQQEMDLIAKLNYPYIVEYKDAWVEKEDYVCIITGYCEGGDMAANIKKARGSYFSEEKVCKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKESNIRLGEFGLAKLLNTEDLTSSAVGTLNYMCPEAFAGMPYGYKSDMWSLGCCMFEIVAHQLAFRAPDRAGLINKINRCSISPMPIVYSSTLKQLIKSMLRKNPEHRPTASELLRHPHLQPYVLRCRNASSIYLPVHLINSNSPKDKTKNKSSDSKDHWDKEAGLAGLVNRLERIYPFEGNGDVHTRNQHNEGKVAVPTSAKDFETKMVDSTSYTLEFSTSISGSKDGSTTSESTVCSVSKEGDFKNRLARDTADSEITSRSTMDCVHEEQGLTTLKSYAIDINTVIKNVEDIFSNEDFNTDEALSEGAKPRDSSKSTVSSEDSNGNDKDGSIDEIMSKSTLDSVHEEQGFMADHFGKSDVIDPSAVSTEVEDNFSNQGFDKMEAESENAKPEDSRKLTVSIENSKGNDNDGSIDDITSKSIIESVHDEQEFTAEHFSNSDVIDTNPVATKVEDNFCNEAFDQTETDREKARREDSIISEVYKENSGSDDNDMSINEIRWKSTLDSVHEEQWFIAEHVQKLDVVDIKATASKDVDKISNEAFDKAEAQREDAKLECSSKSIISYDNSNGNDEDGSCGEITSKTVLESVGEEQGLTAEHFQKSDAIGINAVTTEVEDKLSNEGFDKAESQEKDAKLEDSIKSLSSEGSSSSDKDGSIDEEKSSSPMAPVKVEHDSETGSSLKESENPEAFKEDSRMDSLMSDSKDTHPGKDGNREDTRTISCSTCKEDNNAVVADKPANGISFRKRISGGSNTSCQQRADALESLLELCAQLLQQGKLEELAAVLRPFGEDAVSVSSRETAILLTKGLLASQKLNPET* 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00231 962 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 7 911 - -
Lapu7g00231 962 Pfam Protein kinase domain 10 263 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00231 962 CDD STKc_Nek 9 264 - -
Lapu7g00231 962 MobiDBLite consensus disorder prediction 606 625 - -
Lapu7g00231 962 FunFam serine/threonine-protein kinase Nek6 isoform X2 90 278 - -
Lapu7g00231 962 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672|GO:0006468
Lapu7g00231 962 MobiDBLite consensus disorder prediction 763 862 - -
Lapu7g00231 962 MobiDBLite consensus disorder prediction 514 528 - -
Lapu7g00231 962 SUPERFAMILY Protein kinase-like (PK-like) 7 284 IPR011009 -
Lapu7g00231 962 ProSiteProfiles Protein kinase domain profile. 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00231 962 MobiDBLite consensus disorder prediction 605 638 - -
Lapu7g00231 962 Coils Coil 770 790 - -
Lapu7g00231 962 MobiDBLite consensus disorder prediction 819 862 - -
Lapu7g00231 962 MobiDBLite consensus disorder prediction 546 561 - -
Lapu7g00231 962 SMART serkin_6 10 264 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu7g00231 962 MobiDBLite consensus disorder prediction 512 561 - -
Lapu7g00231 962 MobiDBLite consensus disorder prediction 763 784 - -
Lapu7g00231 962 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Lapu7g00231 962 MobiDBLite consensus disorder prediction 456 471 - -
Lapu7g00231 962 Gene3D Transferase(Phosphotransferase) domain 1 92 311 - -
Lapu7g00231 962 MobiDBLite consensus disorder prediction 447 480 - -
Lapu7g00231 962 MobiDBLite consensus disorder prediction 529 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00231 Lapu-Chr7 2605081 2613504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00231 10 265 MAP Kinase Kinase Kinase AT3G13530 32.171 4.96e-31 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Lapu7g00231 Pkinase 2.9e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00231 K08857 - gmx:100818558 1188.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00231 7 2605081 2613504 Lapu7g00231 7 2605081 2613504 ECH
Lapu1g00138 1 6516446 6522732 Lapu7g00231 7 2605081 2613504 PCT