Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00227 ATGGAGTCTCACGATGAAACAGGATGCCAGGCTCCAGAAAGGCCAATTCTTTGCATTAACAATTGTGGCTTCTTTGGAAGGGCTTCCACCATGAATATGTGTTCCAAATGTTACAAAGACATGCTGTTGAAGCAGGAACAAGACCAACTTGCGGCAGCTTCGGTTGAAAACATTGTGAATGGTGGTTCTGGCTGCAGCGGGAAACAGGCAGTGACTGCAGATTCTGTGGATGTACAAGTTGGAAATGTGGAGATCAAGACAGTCTCTGCTGAGATTTCTGGGGATTCATCCTCTGGTCAGAATTTGGAGATGAAAGCTAAGACAGGTCCCAGCAGATGCGCCACTTGCCGGAAGCGTGTTGGATTAACAGGTTTTAGCTGCAAATGTGGGAACCTCTTTTGTGCAATGCACCGCTATTCTGACAAACACGATTGCCCCTTTGATTATCAGACTGTTGGTCGTGAGGCTATAGCTAAAGCCAACCCCGCAATTAAGGCTGATAAGCTTGATAAAATCTAG 519 0.4624 MESHDETGCQAPERPILCINNCGFFGRASTMNMCSKCYKDMLLKQEQDQLAAASVENIVNGGSGCSGKQAVTADSVDVQVGNVEIKTVSAEISGDSSSGQNLEMKAKTGPSRCATCRKRVGLTGFSCKCGNLFCAMHRYSDKHDCPFDYQTVGREAIAKANPAIKADKLDKI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00227 172 ProSiteProfiles Zinc finger AN1-type profile. 107 153 IPR000058 GO:0008270
Lapu7g00227 172 SMART A20_3 15 39 IPR002653 GO:0003677|GO:0008270
Lapu7g00227 172 Gene3D - 88 168 IPR035896 -
Lapu7g00227 172 Pfam A20-like zinc finger 16 39 IPR002653 GO:0003677|GO:0008270
Lapu7g00227 172 SMART AN1_Zf_4 113 150 IPR000058 GO:0008270
Lapu7g00227 172 Pfam AN1-like Zinc finger 113 150 IPR000058 GO:0008270
Lapu7g00227 172 ProSiteProfiles Zinc finger A20-type profile. 12 46 IPR002653 GO:0003677|GO:0008270
Lapu7g00227 172 SUPERFAMILY AN1-like Zinc finger 104 167 IPR035896 -
Lapu7g00227 172 FunFam Zinc finger AN1-type containing 6 87 168 - -
Lapu7g00227 172 Gene3D - 1 60 - -
Lapu7g00227 172 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 17 53 - -
Lapu7g00227 172 PANTHER AN1-TYPE ZINC FINGER PROTEIN 13 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00227 Lapu-Chr7 2559496 2562094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00227 5 172 C2H2 Transcription Factor Family AT3G52800 41.860 1.15e-40 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00227 - - gmx:100499995 301.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00227 7 2559496 2562094 Lapu7g00227 7 2559496 2562094 ECH
Lapu7g00227 7 2559496 2562094 Lapu11g00636 11 9520110 9520655 ECH