Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00222 ATGGAGCAAACAACGCTCGAAGCCATTCAGTTCAACGAGGAAATCCAAGGCATCATGGCTCCGGCGCCGGAAACCGCCAGTTCCTTCACCGCACTGCTCGAGCTCCCGCCCACGCAGGCCGTCGAGCTCCTCCACTCGCCAGAGCGAGCCGGGAAACCGCCGCGCCACAATCCGAAACCCTATCCGTTGACCTCTTTCGCCTCTGCCTCTGCCTCCACCGCCGCCCCCAACCTGACCTTCCCATCAAACGCCGCACTCATCGAACGCGCCGCCAGGTTCTCCGTCTTCGCCGGAGAGAATTCTAACTCGAACTCGAACTCGAACTCGCCGGAGGTTAAGCGAGAGCTGCCGGAGACCGATTCCAACCCAAGTTCAACTCAGGGCGGCGGCTCCGCCTCCGATCCTGCCCTGGAGAACAAGGACGAGAAGGGCTTGAAGAGGAAGGAGCGAGAGAAGAAGGTTAAAGCTTCGACGAAGAAGAGCAAGAGCGTCGTCGCCGACGAGAGTTCCGGTGACGGCGAGAAGCTTCCGTACGTTCACGTTCGAGTTCGTCGAGGTCAAGCAACTGATAGCCATAGCTTAGCAGAAAGGGCTAGGAGAGAGAAGATAAATGCTCGGATGAAGCTTTTGCAAGAGCTGGTCCCGGGTTGCAACAAGATATCAGGAACAGCATTGGTTCTGGATAAAATCATCAACCATGTGCAATCTCTACAGCATGAAGTGGAGATATTATCGATGAAACTGGCGGCAGTAAACCCTGTAATTGATTTCAACCTTGACAGCTTATTGGCTACGGAAGGAGTGTCTCCAATGGACTGTAACTTCCCTCCCACAGTTGCGCCCGTCGTCTGGCCAGAAATCCCGCAGAATGCAAACAGACAACAATATCAGCAACCGTGGCAGTTCGATGCATTCCACCACCAGCCCATTTGGGGCAGGGAAGAAGACAACACTAATTTCATGACTCCAGAAAACTCACTCTTAAGTTATGACTCATCGGCAAATTCAGGCGCAAATGAGTTGGGAAACCACACAAGGAACAATTAA 1047 0.5377 MEQTTLEAIQFNEEIQGIMAPAPETASSFTALLELPPTQAVELLHSPERAGKPPRHNPKPYPLTSFASASASTAAPNLTFPSNAALIERAARFSVFAGENSNSNSNSNSPEVKRELPETDSNPSSTQGGGSASDPALENKDEKGLKRKEREKKVKASTKKSKSVVADESSGDGEKLPYVHVRVRRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGTALVLDKIINHVQSLQHEVEILSMKLAAVNPVIDFNLDSLLATEGVSPMDCNFPPTVAPVVWPEIPQNANRQQYQQPWQFDAFHHQPIWGREEDNTNFMTPENSLLSYDSSANSGANELGNHTRNN* 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00222 348 Pfam Helix-loop-helix DNA-binding domain 191 238 IPR011598 GO:0046983
Lapu7g00222 348 MobiDBLite consensus disorder prediction 318 348 - -
Lapu7g00222 348 MobiDBLite consensus disorder prediction 315 348 - -
Lapu7g00222 348 MobiDBLite consensus disorder prediction 43 65 - -
Lapu7g00222 348 MobiDBLite consensus disorder prediction 98 112 - -
Lapu7g00222 348 CDD bHLH_AtBPE_like 177 262 - -
Lapu7g00222 348 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 187 237 IPR011598 GO:0046983
Lapu7g00222 348 MobiDBLite consensus disorder prediction 136 172 - -
Lapu7g00222 348 SMART finulus 193 243 IPR011598 GO:0046983
Lapu7g00222 348 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 83 332 IPR024097 GO:0006355
Lapu7g00222 348 Gene3D - 184 255 IPR036638 GO:0046983
Lapu7g00222 348 MobiDBLite consensus disorder prediction 119 133 - -
Lapu7g00222 348 FunFam transcription factor bHLH48-like isoform X1 184 256 - -
Lapu7g00222 348 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 256 IPR036638 GO:0046983
Lapu7g00222 348 MobiDBLite consensus disorder prediction 98 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00222 Lapu-Chr7 2520403 2529008 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00222 2 321 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 51.111 1.54e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu7g00222 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00222 - - gmx:100799133 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00222 7 2520403 2529008 Lapu7g00222 7 2520403 2529008 ECH
Lapu1g00129 1 6277544 6291816 Lapu7g00222 7 2520403 2529008 PCT