Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00219 ATGGATTCTCATACTCATCATCAGGATTACCAACTTCACCTCCATCAGAACCAACCCTCTTCTGGCTTGCTTCGATTTCGCTCTGCGCCGAGCTCGCTCCTTTCAAATCTCACACCTTTCGTGAGTTACGCTGGTGACACTGTTGCTTCAAGTAGCTTCCAGGAGTTGGAAGAAAACAACATCGACAAGTGTTGTTCTAAGGATTTGAGTTCAATGAATTCGCATAAGGGCTATGGTGGGGGCTTGCCACCTCACTATCCAAGACATGGTTCCTCTTCTGCTGCTTCTTCGAGTTCTTCTATGGAAGGGTCGTATGGCTTGATGGGCTCAATGGGAATGGATCATGAAGCTCCAAATAAGGACTTTGGATCAAGTCTTCTCAGGCAGAGTAGCTCTCCTGCTGGCCTTTTCTCCAACAACAATATTTCCTTTCAAAATGGGTTTGCCACCATGAAAGGTGTTGGAAACTATGGTGGGGTGAATAGTAATAATGGTGAACTTAGTCCATGTATTAGCAGATTGAAGAATCAGATTAGCTTCTCACCAAGAAATGCTTCTTCCTTGGGAATGTTATCTCAGATCTCAGAAATAGGGAGTGAAGACATTGAGGCAACTAGTCCCGATGATGATACTAGTCATGGAGGTAATGATACTCAACATTTTGGCCCTGGATTCCCCTATGGTTCTTGGAGTGAGACTTCACAACTCTCAGAAAATCTGAGTGGCTTGAAAAGAGGAAGAAGTGGCAATGAAAAAATATTTTCTGATGTTCAGAATGGAGAACCAGGAAACCAAGTTAATATATTATCACATCACTTGAGTTTACCAAAAACTTCAGCAGAGATGATTACCATGGAGAAGTTGCTTCAGTTCCCTGATTCTGTTCCTTGTAAAATCAGAGCAAAGCGAGGGTGTGCTACTCATCCTCGAAGCATTGCTGAAAGGGTGAGAAGAACTCGGATCAGTGAAAGAATGAGAAAATTACAAGAGCTTGTCCCAAACATGGACAAGCAAACCAACACAGCAGACATGTTGGACTTGGCTGTTGAATACATTAAAGATCTTCAGAAACAATTCAAGACTCTTAGTGATAAACGGGCAAACTGCAAGTGTTCAAGCATGCAAAAGGCAGATTCATGA 1140 0.4272 MDSHTHHQDYQLHLHQNQPSSGLLRFRSAPSSLLSNLTPFVSYAGDTVASSSFQELEENNIDKCCSKDLSSMNSHKGYGGGLPPHYPRHGSSSAASSSSSMEGSYGLMGSMGMDHEAPNKDFGSSLLRQSSSPAGLFSNNNISFQNGFATMKGVGNYGGVNSNNGELSPCISRLKNQISFSPRNASSLGMLSQISEIGSEDIEATSPDDDTSHGGNDTQHFGPGFPYGSWSETSQLSENLSGLKRGRSGNEKIFSDVQNGEPGNQVNILSHHLSLPKTSAEMITMEKLLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLSDKRANCKCSSMQKADS* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00219 379 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 27 375 - -
Lapu7g00219 379 MobiDBLite consensus disorder prediction 202 228 - -
Lapu7g00219 379 MobiDBLite consensus disorder prediction 76 103 - -
Lapu7g00219 379 Gene3D - 306 377 IPR036638 GO:0046983
Lapu7g00219 379 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 308 370 IPR036638 GO:0046983
Lapu7g00219 379 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 305 355 IPR011598 GO:0046983
Lapu7g00219 379 SMART finulus 311 361 IPR011598 GO:0046983
Lapu7g00219 379 MobiDBLite consensus disorder prediction 1 23 - -
Lapu7g00219 379 FunFam Transcription factor bHLH130 family 306 375 - -
Lapu7g00219 379 Pfam Helix-loop-helix DNA-binding domain 310 356 IPR011598 GO:0046983
Lapu7g00219 379 CDD bHLH_AtbHLH_like 310 363 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00219 Lapu-Chr7 2463704 2467736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00219 13 361 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 46.354 5.83e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu7g00219 HLH 3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00219 - - gmx:100819605 627.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00219 7 2463704 2467736 Lapu7g00219 7 2463704 2467736 ECH
Lapu7g00219 7 2463704 2467736 Lapu7g02652 7 42698138 42699920 ECH
Lapu1g00126 1 6173522 6176663 Lapu7g00219 7 2463704 2467736 PCT