Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00202 ATGGCCTCCAAAGGTCCCAGGTCTAAGATTGATCACGAGAGCAGAGCCAAACGGCAAAAGGCTCTTGAAGCTCCAAGGGAGCCTCGGCGACCCAAAACTCACTGGGACCATGTCTTAGAAGAAATGGTGTGGTTATCAAAGGATTTTGAATCAGAGAGGAAATGGAAATTAGCTCAGGCAAAGAAAGTAGCTTTAAGAGCCAGCAAAGGCATGATAGATCAGGCTACAAGAGGTGAAAAGAAGATTAAGGAAGAAGAACAGCGGTTAAGAAAGGTTGCATTAAATATTTCTAAGGATGTTAAGAAATTCTGGACAAAAATAGAAAAGCTGGTTCTTTACAAACATCAAATGGAACTCGACGAGAAGAAGAAAAAGGCACTTGACAAACAGCTTGAGTTTTTATTAGGTCAAACTGAGAGGTACTCAACAATGCTGGCAGAAAATCTTGTGGATGCTCATAAAGCAGGAGAGAATAATTCTGCCGAGCATCACACGAGTATTCAACCCAAAGATGCACATGGAGATGTTATTAATGAACCCAAGGAGGCTGATGTTGCGGAGTATCAATCAGATGCTGCTGACAATGATGATGACTATGATGTACAATCTGATGATGAATCGGAGGACGATGAGCAAACAATTGAGCAAGATGAGGCTTTTATTACTAAAGAAGAGAGACAAGAGGAATTGGAAGCTTTGCGTAATGAAATGGATCTTCCGATTGAGGAGTTACTCAAGCGTTATGCAGGGGAGAAAGGAGAAACTGTGATGAATGAAAGTAGTCCAGAGCACAGTGAAGATGTTGAGAAAATAGTTAGAACTAGTGATGAAAATGGTGATGATCATTTATCTGTTACCAAAATTGGTACAAACAACTCCAGCATGGTCTCTGGTCGACGTTGTGATGGAAGTAATGGTGATGTCGCTAGTCCGACAAACAATCTATCTCAATGTGAGGATGGTCAATCTGAAAATCTAAAAGGGGTTCCTAGTGAGGCAGCCGATGAAGATTTTGCATATGATTTTACTGATGAAGAGGAAGATGGTGACTTTCTGCTTGGCACAGAAGACAAGGATGATGAAACAACCTTATCAGAGGAGGAAAAACTGGAAAGCGTTGATGCAATAGATCCCAAGGATGAGATTGCATTATTACAAAAAGAGAGTGACATGCCTGTTGAGGAACTGCTTGCAAGGTATAAAAGGGACCCAAGTGACAACGAAGATGGTGGAAATGAATCTGATTATGCTTCTGCTTTATCTGAAGACCATTCAGATTCTCCTGTCCATGAAGAGGCAAGGAAAACGGATTCTGCCATTCCTATGGATGAAGATATTAAGTCTGGAGAGCGCCTGGCTACCATACAGTCCCAGGCAGAAGAACATTGGGAATCACCTCATGAAAATTTGGATCAGAGGGAAAGTGAGGATATAATTGCTGACGCAGCTGCTGCTGCAAGATCAGCACAACCTACTGGGAACACCTTCTCCACCACTAATGTGCGTACAAAGTTCCCTTTTCTTCTCAAGTATTCTCTTCGTGAGTATCAACATATTGGATTGGATTGGCTTGTCACGATGTATGAAAAAAGACTGAATGGAATTCTGGCAGATGAAATGGGTCTTGGAAAAACAATTATGACTATATCATTACTTGCACATCTTGCTTGTGAAAAAGGGATTTGGGGTCCACATTTAATTGTGGTGCCAACTAGTGTAATGCTTAACTGGGAAACTGAATTTCTGAAATGGTGTCCTGCCTTTAAAATTTTGACCTATTTTGGAAGTGCAAAGGAGCGAAAACTTAAAAGGCAGGGATGGTTAAAACCAAACTCATTTCATGTATGCATAACAACTTATAGATTAGTTATTCAGGACTCCAAAGTTTTCAAGCGCAAAAAGTGGAAATACTTAATCTTAGATGAAGCTCATCTCATTAAAAACTGGAAGTCACAAAGGTGGCAGACACTCTTGAATTTCAATTCAAAACGGCGGATTCTCTTGACTGGTACGCCACTACAGAATGATCTCATGGAACTGTGGTCTCTCATGCATTTCTTAATGCCCCATGTTTTCCAGTCGCATCAAGAGTTTAAGGATTGGTTTAGTAATCCTATATCTGGTATGGTAGAGGGAGAAGAGAAAATTAATAAAGAGGTTGTTGACCGCCTGCACAATGTCCTTCGTCCCTTTTTACTCCGTCGACTAAAGCGAGATGTGGAAAAGCAACTTCCGATGAAGCATGAACATGTCATATATTGTAGACTATCAAAGAGGCAGCGGAATTTGTATGAAGATTTCATTGCTAGCTCAGAGACTCAAGCAACTCTTGCAAGTGCCAATTTTTTTGGGATGATTAGTATTATCATGCAACTTCGTAAAGTTTGCAATCATCCTGACCTATTTGAGGGTCGTCCTATTGTCAGTTCTTTTGATATCTGTGGTATTGATGTTCAGTTAAGTTCTTCTGTTTGCTCTATGCTTTTGCCTAGTCCGTTTTCAGTGGTGGACCTAAGAGGTTTGGGTCTTTTATTCACTGATCTTGACTATAGCATGGCTGCTTGGGAAAGTGATGAAGTACAGGCTATTGAGACCCCTGCAACCTCAATCATGGAACGTACTGATATAGATGAGCTAGAGGTAATTAGGCCACTGAAATGTCAAAAGAAGTTGCAAGGAACAAACATTTTTGAAGACATCCAAAGGAAAATCTGGGAAGAGAGGCTAAACCAGGCAAAGGAACGTGCAGCAGCTATTGCATGGTGGAACTCCTTGAGATGTAAAAAAAGACCTATGTACTCAACAAGTCTGAGGGATCTTGTTACCTTAAGACATCCTGTATATGATATTCATCAGGTGAAAGCAAACCCTGCTTCGTACATGTACTCAACAACGCTAGCTGACATTATTCTCTCCCCTATTGAACGATTTCAAAAGATGACTGATGTGGTTGAAAGCTTCATGTTTGCAATTCCAGCTGCACGAGCACCCTCTCCTGTTTGCTGGTGCAGTACAAATGAGACAAATGTGTTTCTGCAGTCATCTTACAAGCAGAAATGCTCTGAAGTTTTGTTACCACTACTGTCACCAATCCGACCTGCAATTGTTCGCCGACAAGTGTATTTCCCTGATAGGCGTCTTATACAATTTGACTGTGGGAAACTGCAGGAACTGGCAAATTTGTTGAGAAAATTAAAATCAGAAGGGCACCGAGCTCTGATATTCACCCAGATGACAAAGATGCTTGACATATTAGAGGCATTCATTAATTTGTATGGCTATACTTACATGCGCTTAGATGGATCAACCCAACCAGAGGAGAGACAGACCTTAATGCAGCGCTTTAACACAAACCCAAAATATTTTCTTTTCATCTTGTCAACCCGTAGTGGGGGTGTTGGTATCAATCTAGTTGGAGCAGACACAGTCATTTTTTATGATAGTGACTGGAATCCTGCCATGGATCAACAGGCACAAGATCGATGCCACAGAATTGGTCAGACACGTGAAGTTCATATTTATAGATTGATTAGTGAAAGCACCATTGAGGAGAATATTTTGAAGAAAGCAAATCAGAAGCGTGCACTTGATAATCTAGTTATACAAAGTGGGGGTTATAATACTGAGTTCTTCAAGAAGCTCGATCCTATGGAACTATTTTCAGGTCATAGAACACTTTCAATAAAAAATATGCTTAAGGAGAAAAACCAGAACAATGGGGAAGTTTCTGTAACGAATGCAGATGTAGAGGCTGCATTGAAATGTGTTGAAGATGAGGTAGATTACATGGCTTTGAAGAAAGTTGAACTGGAAGAGGCTGTGGACAACCAGGAGTTTACAGAAGAAGCCATTGGGAGACTTGAAGAGGATGAATATGTAAATGAAGATGATGAAACTGCTGACTTAGGTGAATCTGTTTCCAACATAAATAAAGAGAATGCATTAATGTTAAATGGAAGTGATCATAAGGAAGATAGACCACCAAACTCTGTTGCTGTCAAAGAAGATGATGCTGATGTGCTGGCTGATGTCAAACAGATGGCTGCAGCTGCAGCTGCTGCTGGACAAGCTATCTCAGCATTTGAAAATGAGCTACGCCCTATTGATCGATATGCCATTCGCTTTCTGGAACTGTGGGATCCAATTATAGATAAAACAGCCTTGGAATCTGAAGTAAGGATTGAGGACACAGAATGGGAGTTGGATCGCATTGAAAAGTACAAGGAGGAAATGGAGGCTGAAATCGATGAAGATGAGGAACCTCTTGTATATGAAAGCTGGGATGCTGATTTTGCAACAATGGCATATCGGCAGCAAGTAGAGGCCTTGGCTCAGCATCAGTTGATGGAGGAACTCGAATATGAAGCTAGACTGAAAGAAGCTGAGGATGAAGCTTGTGATTCTAAAAAGACAACACCTGGGGATTTGAAGCCCAAATCTAAAAAGAAACCTAAGAAGGCAAAGTTCAAATCTCTAAAGAAAGGATCTTTAACTTCTGGCTTGAAGCCTGTGAAAGAAGAGTCACAAGTAGAGCCAATGAACATAGATGACGAGGATGTCACTGGTGTGGATTTTGTGTCTCCAAATTCATCCATGCAGAAAAAACGTAAGTCTAAAGTAACAACTGATGGTGAAGAAAAGAGACTTAAGAAGTCCAAAAAGTCCAAGAGGGATCCTCCTGACATTTATGCATCCGACTTAGAATCCAACGCCTTAGTTGTGCAATGTGAACATGCAGAATCAAAGACTTGTGAAAGTCTGGTTGATTTGGAACATAAAACAGCAGGCAGGGGTAAGATGGGAGGAAAAATATCCATCACTCCTATGCCTGTTAAACGGATCTGGACGATAAAGCCAGAAAAAATTAGAAAGGGAAATCAGTGGTCCAAAGATTGTATTCCATCAGCTGATTTTTGGCTGGCTCAGGAGGATGCAATATTATGCGCTGTTGTTCATGAATATGGTCCTAACTGGAGTTTGGTTAGTGATATTCTTAATAGCATGACTGCTGGTGGGTCATACAGGGGGAGATATCGACATCCTGTCCACTGCTGTGAGCGGTTTAGAGAACTATTCCAGAAGAATGTCTTGTCGATGGACAATGCAAATAATGAGAAGATCAACACTCCTGGCTCTGGAAAGGCTCTTCTTAAAGTTACAGAGGATAACATTCGGATGCTGTTGGATGTTGCTTCTGAGCAGGTAAATAAGGAGTTGCTGCTGCAGAAGCATTTTTTTGCACTGCTTTCAACTGCCTGGAAGTTGGCATCACATGTTGACCGCAGGCAAAATCCATCACCCACCTGTAATGGTCTCTATTTCGATCAGAGTTTTTTTACTTCCATTGGCCAGCCTTCCCAAAATTCCTTGAAGAAATCCTCTGAAAGGATTCCATTTGCACATTTGGCTCAGAGTAAGAAGTTAGTAGCAGCTGCACTTGATGATACCACAACTAGGCAAGTGAATGACAGAGTCATCCTCTCTAACCATGGGGAAGGCATGCCAATGAGTGCAGATCGGCTCGATATAACTCTGGAGTTCCCTAAGGAGAGTGATGTCTTAGCTTTGTTTCCATCTGTCATAAATTTATCGATACATGGGACTGAACCAACAACACCATCTTTTAGTAAGCAAACAGGAGAAGATGAATTTAAAGTTGGTCTGTTCATTGCTGAGAATCGTTTCAGGGAGGCAACAAGAATTTGTGAAGAAGACAGCTCTGGATGGGCATCATCTGCGTTCCCAACCAGCGATGCAAGGTCTCGACCTGGATCCAGGACACAATCCTCTGGAAAGCAGAAGTCTTCCATATCTGACTCTGCTAAGCCTTCCAGGTCGAAGTCCAAAAGAGCTCCAATTGATCCTAGTGAAATGCATCATCATCAGGCTGACTCAATATTCCAGTCACTGCCATCACTTAAGGATCTGAGATTTGATCTTTCTTCATTCACTTCAGATGAAGATGGACTTAACGCTGTGGATAGATGTTTCCCCTTTGACTTGAGTGGGGAAAGTTCATGGGAAATGGAAGGTGTTGGAATGATCCCACATGATTATGTTACTGGTTTAATCTCAGACCTTGATGATTGTACAACATTCCCTGAATATACTGACATTAGATGA 6123 0.4132 MASKGPRSKIDHESRAKRQKALEAPREPRRPKTHWDHVLEEMVWLSKDFESERKWKLAQAKKVALRASKGMIDQATRGEKKIKEEEQRLRKVALNISKDVKKFWTKIEKLVLYKHQMELDEKKKKALDKQLEFLLGQTERYSTMLAENLVDAHKAGENNSAEHHTSIQPKDAHGDVINEPKEADVAEYQSDAADNDDDYDVQSDDESEDDEQTIEQDEAFITKEERQEELEALRNEMDLPIEELLKRYAGEKGETVMNESSPEHSEDVEKIVRTSDENGDDHLSVTKIGTNNSSMVSGRRCDGSNGDVASPTNNLSQCEDGQSENLKGVPSEAADEDFAYDFTDEEEDGDFLLGTEDKDDETTLSEEEKLESVDAIDPKDEIALLQKESDMPVEELLARYKRDPSDNEDGGNESDYASALSEDHSDSPVHEEARKTDSAIPMDEDIKSGERLATIQSQAEEHWESPHENLDQRESEDIIADAAAAARSAQPTGNTFSTTNVRTKFPFLLKYSLREYQHIGLDWLVTMYEKRLNGILADEMGLGKTIMTISLLAHLACEKGIWGPHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQGWLKPNSFHVCITTYRLVIQDSKVFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKDWFSNPISGMVEGEEKINKEVVDRLHNVLRPFLLRRLKRDVEKQLPMKHEHVIYCRLSKRQRNLYEDFIASSETQATLASANFFGMISIIMQLRKVCNHPDLFEGRPIVSSFDICGIDVQLSSSVCSMLLPSPFSVVDLRGLGLLFTDLDYSMAAWESDEVQAIETPATSIMERTDIDELEVIRPLKCQKKLQGTNIFEDIQRKIWEERLNQAKERAAAIAWWNSLRCKKRPMYSTSLRDLVTLRHPVYDIHQVKANPASYMYSTTLADIILSPIERFQKMTDVVESFMFAIPAARAPSPVCWCSTNETNVFLQSSYKQKCSEVLLPLLSPIRPAIVRRQVYFPDRRLIQFDCGKLQELANLLRKLKSEGHRALIFTQMTKMLDILEAFINLYGYTYMRLDGSTQPEERQTLMQRFNTNPKYFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENILKKANQKRALDNLVIQSGGYNTEFFKKLDPMELFSGHRTLSIKNMLKEKNQNNGEVSVTNADVEAALKCVEDEVDYMALKKVELEEAVDNQEFTEEAIGRLEEDEYVNEDDETADLGESVSNINKENALMLNGSDHKEDRPPNSVAVKEDDADVLADVKQMAAAAAAAGQAISAFENELRPIDRYAIRFLELWDPIIDKTALESEVRIEDTEWELDRIEKYKEEMEAEIDEDEEPLVYESWDADFATMAYRQQVEALAQHQLMEELEYEARLKEAEDEACDSKKTTPGDLKPKSKKKPKKAKFKSLKKGSLTSGLKPVKEESQVEPMNIDDEDVTGVDFVSPNSSMQKKRKSKVTTDGEEKRLKKSKKSKRDPPDIYASDLESNALVVQCEHAESKTCESLVDLEHKTAGRGKMGGKISITPMPVKRIWTIKPEKIRKGNQWSKDCIPSADFWLAQEDAILCAVVHEYGPNWSLVSDILNSMTAGGSYRGRYRHPVHCCERFRELFQKNVLSMDNANNEKINTPGSGKALLKVTEDNIRMLLDVASEQVNKELLLQKHFFALLSTAWKLASHVDRRQNPSPTCNGLYFDQSFFTSIGQPSQNSLKKSSERIPFAHLAQSKKLVAAALDDTTTRQVNDRVILSNHGEGMPMSADRLDITLEFPKESDVLALFPSVINLSIHGTEPTTPSFSKQTGEDEFKVGLFIAENRFREATRICEEDSSGWASSAFPTSDARSRPGSRTQSSGKQKSSISDSAKPSRSKSKRAPIDPSEMHHHQADSIFQSLPSLKDLRFDLSSFTSDEDGLNAVDRCFPFDLSGESSWEMEGVGMIPHDYVTGLISDLDDCTTFPEYTDIR* 2041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 1463 1564 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 152 226 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 253 446 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 156 188 - -
Lapu7g00202 2040 Gene3D - 482 758 IPR038718 -
Lapu7g00202 2040 SMART bromneu2 23 94 IPR014012 -
Lapu7g00202 2040 SUPERFAMILY Homeodomain-like 1637 1697 IPR009057 -
Lapu7g00202 2040 Pfam Helicase conserved C-terminal domain 1054 1166 IPR001650 -
Lapu7g00202 2040 CDD DEXQc_SRCAP 513 735 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 189 215 - -
Lapu7g00202 2040 Coils Coil 1394 1414 - -
Lapu7g00202 2040 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1057 1207 IPR001650 -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 1 33 - -
Lapu7g00202 2040 Coils Coil 216 236 - -
Lapu7g00202 2040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 737 1222 IPR027417 -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 1906 1942 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 253 283 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 337 367 - -
Lapu7g00202 2040 FunFam Photoperiod-independent early flowering 1 483 758 - -
Lapu7g00202 2040 Gene3D - 759 818 - -
Lapu7g00202 2040 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 735 IPR027417 -
Lapu7g00202 2040 Pfam HSA domain 27 93 IPR014012 -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 424 446 - -
Lapu7g00202 2040 CDD SF2_C_SNF 1042 1177 - -
Lapu7g00202 2040 FunFam protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 1024 1273 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 1463 1478 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 284 324 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 368 409 - -
Lapu7g00202 2040 Gene3D - 1624 1696 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 1943 1961 - -
Lapu7g00202 2040 Pfam Myb-like DNA-binding domain 1639 1703 - -
Lapu7g00202 2040 Pfam SNF2-related domain 530 802 IPR000330 GO:0005524|GO:0140658
Lapu7g00202 2040 FunFam Protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 759 824 - -
Lapu7g00202 2040 Coils Coil 1444 1464 - -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 1906 1963 - -
Lapu7g00202 2040 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 525 690 IPR014001 -
Lapu7g00202 2040 Gene3D - 1017 1316 IPR027417 -
Lapu7g00202 2040 Coils Coil 1270 1290 - -
Lapu7g00202 2040 ProSiteProfiles HSA domain profile. 22 94 IPR014012 -
Lapu7g00202 2040 MobiDBLite consensus disorder prediction 1536 1563 - -
Lapu7g00202 2040 SMART ultradead3 509 702 IPR014001 -
Lapu7g00202 2040 PANTHER HELICASE SRCAP-RELATED 15 1933 - -
Lapu7g00202 2040 SMART helicmild6 1083 1166 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00202 Lapu-Chr7 2224151 2241004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00202 533 805 RAD5 or RAD16-like Gene Family AT5G43530 29.814 5.01e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu7g00202 SNF2_N 8.2e-70 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00202 K11661 - gmx:100794898 3496.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00202 7 2224151 2241004 Lapu7g00202 7 2224151 2241004 ECH