Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00201 ATGGACGTTCGCAAGCGCGGAAGGCCCGAACCCGCCGTAGGCCTTAACGGCGCCGTTAAGAAGACCAAGCAAGACTTGGACTCGTTATCAGGTGGTGTAGGAAGCAAATCGAAGCCCTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCATTTGGTGAGGGTTGTCATTTCTTGCATTATGTTCCTGGTGGTTATAATGCGGTTGCCCATATGATGAATTTAAAACCTGCTGCTCCTCCACCAAGAGCTGTTGCTGCAGCACCTCCGGTCCCTAATGGCTCTGCTCCATCTGCTGTTAAAACACGCATATGTAACAAGTTCAATACTGCTGAAGGATGCAAATTTGGTGACAAGTGCCATTTTGCTCATGGTGAATGGGAACTTGGCAAACCTATTGCTCCCTTAATTGACGATCATCGACCTTTGGGACCTCCTGCAGCTGGTCGTATGGCTGGTCGAATTGAGCCTCCCTTGGCTGGTAGCTTTGGGGCCATTTCTACCGCCAAGATCAGTGTAGAAGCTTCTCTGGCTGGAGCTATCATTGGGAAGGGTGGTGTGAACTCGAAGCAGATATGTCGCCAAACAGGAGCAAAACTTTCAATCCGAGAACACGAGACCGATCCAAACCTTAGAAACATTGAACTCGAGGGAACTTTTGAACAGATAAAGGAGGCAAGCAATATGGTAAAAGATTTACTTTTGACTGTTTCAATGTCTGCGCCTCCCAAATCCAACCCCGGTGTTCCTGGTGCCCCGGCTCCACCCGGAAGCAACTTCAAGACCAAGCTGTGTGAGAATTTTGCAAAAGGATCTTGCACCTTTGGAGATCGATGCCACTTTGCACATGGAGCTGGTGAATTGCGCAAGCAGGGGGCATGA 879 0.4949 MDVRKRGRPEPAVGLNGAVKKTKQDLDSLSGGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAHMMNLKPAAPPPRAVAAAPPVPNGSAPSAVKTRICNKFNTAEGCKFGDKCHFAHGEWELGKPIAPLIDDHRPLGPPAAGRMAGRIEPPLAGSFGAISTAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIREHETDPNLRNIELEGTFEQIKEASNMVKDLLLTVSMSAPPKSNPGVPGAPAPPGSNFKTKLCENFAKGSCTFGDRCHFAHGAGELRKQGA* 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00201 292 ProSiteProfiles Type-1 KH domain profile. 165 229 - -
Lapu7g00201 292 Gene3D - 93 130 - -
Lapu7g00201 292 Gene3D - 257 290 - -
Lapu7g00201 292 CDD KH-I_AtC3H36_like 168 233 - -
Lapu7g00201 292 ProSiteProfiles Zinc finger C3H1-type profile. 98 126 IPR000571 GO:0046872
Lapu7g00201 292 FunFam Zinc finger CCCH domain-containing protein 253 289 - -
Lapu7g00201 292 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
Lapu7g00201 292 SUPERFAMILY CCCH zinc finger 97 129 IPR036855 GO:0046872
Lapu7g00201 292 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Lapu7g00201 292 FunFam Zinc finger CCCH domain-containing protein 93 130 - -
Lapu7g00201 292 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 157 235 IPR036612 GO:0003723
Lapu7g00201 292 PANTHER CCCH ZINC FINGER/TIS11-RELATED 31 134 IPR045877 GO:0003729
Lapu7g00201 292 SMART kh_6 164 234 IPR004087 GO:0003676
Lapu7g00201 292 Gene3D K Homology domain, type 1 163 256 IPR036612 GO:0003723
Lapu7g00201 292 SMART c3hfinal6 258 284 IPR000571 GO:0046872
Lapu7g00201 292 SMART c3hfinal6 98 125 IPR000571 GO:0046872
Lapu7g00201 292 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Lapu7g00201 292 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Lapu7g00201 292 Pfam KH domain 168 230 IPR004088 GO:0003723
Lapu7g00201 292 SUPERFAMILY CCCH zinc finger 258 288 IPR036855 GO:0046872
Lapu7g00201 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 259 283 IPR000571 GO:0046872
Lapu7g00201 292 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 100 125 IPR000571 GO:0046872
Lapu7g00201 292 ProSiteProfiles Zinc finger C3H1-type profile. 258 285 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00201 Lapu-Chr7 2213999 2218946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00201 35 133 C3H Transcription Factor Family AT1G68200 26.263 1.36e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lapu7g00201 KH_1 8.8e-12 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00201 - - pvu:PHAVU_007G259300g 551.206