Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00195 ATGGCAGATGGTGAGGATATCCAACCTCTTGTTTGTGATAATGGAACTGGAATGGTCAAGGCTGGATTTGCTGGAGATGATGCTCCAAGGGCTGTGTTCCCTAGCATTGTGGGTCGTCCACGTCACACTGGTGTGATGGTTGGAATGGGACAAAAGGATGCTTATGTTGGTGATGAGGCTCAATCCAAGAGAGGTATTTTGACTCTGAAATACCCGATTGAGCATGGCATAGTTAGCAACTGGGATGATATGGAAAAGATCTGGCATCACACTTTCTACAATGAGCTACGTGTGGCCCCAGAAGAGCACCCTGTTCTCCTCACAGAAGCACCACTCAATCCCAAGGCAAACAGAGAGAAAATGACACAGATTATGTTTGAGACCTTCAACACTCCAGCTATGTATGTTGCCATCCAGGCAGTGCTTTCTCTTTATGCCAGTGGCCGTACAACTGGTATTGTTCTTGACTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTATGAAGGCTACTCCCTGCCACATGCAATCCTGCGTTTGGATCTTGCAGGGCGTGATCTCACTGATGCCCTCATGAAAATCTTAACCGAGCGTGGCTACTCTTTCACCACTACTGCTGAGAGAGAAATTGTGAGAGATGTTAAGGAGAAGTTAGCCTATATTGCTCTTGACTATGAGCAAGAGCTAGAAACAGCAAAAACGAGCTCAGCTGTTGAGAAGAGCTATGAGCTACCTGATGGACAGGTGATCACAATCGGTGCCGAGAGGTTCCGTTGCCCTGAAGTTCTCTTCCAGCCATCCATGATTGGGATGGAATCTTCTGGCATTCATGAAACCACATACAACTCCATCATGAAGTGTGATGTTGACATCAGGAAGGACCTCTATGGTAACATTGTGTTGAGTGGTGGTTCAACAATGTTCCCTGGCATTGCTGATAGGATGAGCAAGGAGATCACAGCATTGGCACCAAGCAGCATGAAAATTAAGGTGGTGGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTCAGCACCTTCCAACAGCTTCCTTTCTTAAAAGAAGAAGCTTTTCTAAGTAACTTCTGTGAAAGCTCCTTTTTTTTTTCACAATTATTTTCTATGTTCTTTTTATAG 1158 0.4577 MADGEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYSLPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMESSGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQLPFLKEEAFLSNFCESSFFFSQLFSMFFL* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00195 385 PRINTS Actin signature 51 62 IPR004000 -
Lapu7g00195 385 PRINTS Actin signature 63 85 IPR004000 -
Lapu7g00195 385 PRINTS Actin signature 142 161 IPR004000 -
Lapu7g00195 385 PRINTS Actin signature 28 37 IPR004000 -
Lapu7g00195 385 PRINTS Actin signature 117 130 IPR004000 -
Lapu7g00195 385 PRINTS Actin signature 238 254 IPR004000 -
Lapu7g00195 385 FunFam Actin, alpha skeletal muscle 3 179 - -
Lapu7g00195 385 FunFam Major actin 260 340 - -
Lapu7g00195 385 Pfam Actin 5 363 IPR004000 -
Lapu7g00195 385 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lapu7g00195 385 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lapu7g00195 385 SUPERFAMILY Actin-like ATPase domain 149 363 IPR043129 -
Lapu7g00195 385 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lapu7g00195 385 Gene3D - 140 340 - -
Lapu7g00195 385 Gene3D - 10 363 - -
Lapu7g00195 385 Gene3D Actin; Chain A, domain 4 182 273 - -
Lapu7g00195 385 FunFam Actin, muscle 182 273 - -
Lapu7g00195 385 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Lapu7g00195 385 PANTHER ACTIN 9 362 IPR004000 -
Lapu7g00195 385 SMART actin_3 7 375 IPR004000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00195 Lapu-Chr7 2164811 2168394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00195 1 363 Miscellaneous Gene Families AT3G53750 95.041 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00195 K10355 - gmx:100777705 710.294
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00195 7 2164811 2168394 Lapu7g00195 7 2164811 2168394 ECH
Lapu1g00086 1 5522897 5526507 Lapu7g00195 7 2164811 2168394 PCT