Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00188 ATGGAGCTGGCTTTGAGCTTAGGGGACACATCCAAGCCCTTTACTTTTCTCGACAAGCCTGCAAATTTACCCTCCAAGGACCCACCTGGGTTCTGCGTAGCACCGGGGAAAGGGTTTGATGAGAAAAGAACTGATGCTGAGAAAAGGGGTTCTTCAGATCCACCAGTTCAACTTGATCTTCTTCCTTTCACTCCGGTTCTCAGATCGCAACCTCCTTCGCAGCTTCGAATCCCTTGGCTCACTGAAGCATGTGGAGCTGGGAGGGTACTGGACGTAAACCTTTTTCCGGCGGCCGCGGAGGACGGTGATGATGGGACGTCGCTGTCGTCGCCGAGCAGCGCGGTGTCTCCGTTTCAGATGGATTTCAGCATAAGAAACGGTAATGCAGAGTTTGGAGGAAGAAACAAGAGGGAACAACAAGAGGGTGAAGGTACCAGAGCGAGTGACGACGAAGAAAATGGCTCAACTCGGAAGAAACTCAGACTTTCCAAAGAACAATCAGCTTTTCTTGAAGAAAGCTTCAAAGAACACACCACACTCAATCCAAAGCAGAAACTTGCTTTGGCTAAACAGTTGAATCTCCTTCCTCGTCAAGTGGAGGTTTGGTTTCAGAACAGAAGGGCGAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAGTATTTGAAGAGATGCTGTGAGACTCTAACAGAAGAGAATAGAAGGTTGCAGAAGGAGCTTCAAGAACTTAGAGCCTTGAAAACTTCTCAACCATTCTACATGCAGCTTCCAGCTACCACTCTCACCATGTGTCCCTCTTGTGAAAGGGTTGCCACAAATTCCACCACAACTAACCAAACTTCTTCCACTATTAACAATAATGCTTCTCAAATCCCTGTCGAGTTATCTCTCAGCAAACCCAGAATATTGCCCTTCCCTAATGCCCAGGCCCAAGCAACCCAGGCTCAAGCCCAAGCCCAAGCCCATCAGACAGCCTCCTCATGA 984 0.4837 MELALSLGDTSKPFTFLDKPANLPSKDPPGFCVAPGKGFDEKRTDAEKRGSSDPPVQLDLLPFTPVLRSQPPSQLRIPWLTEACGAGRVLDVNLFPAAAEDGDDGTSLSSPSSAVSPFQMDFSIRNGNAEFGGRNKREQQEGEGTRASDDEENGSTRKKLRLSKEQSAFLEESFKEHTTLNPKQKLALAKQLNLLPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELRALKTSQPFYMQLPATTLTMCPSCERVATNSTTTNQTSSTINNNASQIPVELSLSKPRILPFPNAQAQATQAQAQAQAHQTASS* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00188 327 SMART HOX_1 155 217 IPR001356 GO:0003677
Lapu7g00188 327 SUPERFAMILY Homeodomain-like 150 214 IPR009057 -
Lapu7g00188 327 MobiDBLite consensus disorder prediction 105 119 - -
Lapu7g00188 327 MobiDBLite consensus disorder prediction 1 64 - -
Lapu7g00188 327 Coils Coil 219 249 - -
Lapu7g00188 327 Pfam Homeobox associated leucine zipper 213 247 IPR003106 GO:0006355|GO:0043565
Lapu7g00188 327 CDD bZIP 206 245 - -
Lapu7g00188 327 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 51 288 - -
Lapu7g00188 327 CDD homeodomain 157 214 IPR001356 GO:0003677
Lapu7g00188 327 SMART halz 213 256 IPR003106 GO:0006355|GO:0043565
Lapu7g00188 327 MobiDBLite consensus disorder prediction 38 52 - -
Lapu7g00188 327 ProSiteProfiles 'Homeobox' domain profile. 153 213 IPR001356 GO:0003677
Lapu7g00188 327 Pfam Homeodomain 157 211 IPR001356 GO:0003677
Lapu7g00188 327 FunFam Homeobox-leucine zipper protein 18 141 218 - -
Lapu7g00188 327 MobiDBLite consensus disorder prediction 307 327 - -
Lapu7g00188 327 ProSitePatterns 'Homeobox' domain signature. 188 211 IPR017970 GO:0000981|GO:0006355
Lapu7g00188 327 Gene3D - 161 211 - -
Lapu7g00188 327 MobiDBLite consensus disorder prediction 131 162 - -
Lapu7g00188 327 MobiDBLite consensus disorder prediction 306 327 - -
Lapu7g00188 327 MobiDBLite consensus disorder prediction 125 162 - -
Lapu7g00188 327 MobiDBLite consensus disorder prediction 100 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00188 Lapu-Chr7 2058099 2060514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00188 149 310 Homeobox Transcription Factor Family AT4G37790 65.644 5.94e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu7g00188 Homeodomain 5.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00188 K09338 - gmx:100776113 480.33