Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00178 ATGAGAACTTCGTGGGCGGATTCTGCTGACAACTCAGCCATTGGTTCTGGCAATGGCAATTCCTCGGCTCACCCTCCTCGAGGTACATATGTGCCTCCGCATCTTCGCAACAGGTCATTGTCGTCGGAGGTTCCTGCAGCGTCGCCGGCTCCTTTGCCGGTGAATGACCGGGTGAATCATGGTGGTCCACCTCCTCACCAGGGTGGTGGTTACTTTAAAGCTGATCAAGGGCGGCAACAAGGATATGTTTCTGGTTATCAGACTGGTGGTGCCTGGAATGGTAGAGGGGCGGGGAGGGACCGTGGGAGGCGTGAGGTGAACCCTTTTGAGAACGATGAAGCTGAGGATCAATCTTCGGGTGAGCTAGAGAACACTGGGATTAACTTTGATGCTTATGATGATATCCCTGTGGAGACTAGTGGGGAGAATGTGCCCCCGCCTGTGAATACATTTGCCGAAATAGATTTGGGTGAGGCATTGAATCAGAATATACAGAGATGCAAGTATGTGAAACCAACCCCAGTTCAGAGGTATGCCATTCCAATTTCCCTTTCGGGGCGAGACTTGATGGCCTGTGCTCAGACCGGATCAGGAAAGACAGCCGCCTTTTGCTTCCCTATAATAAGTGGAATCATGAGGGAGCAATATGTTCAAAGGCCACGTGTGGCTAGAACTGCTTTTCCGCTGGCACTTATCCTCTCCCCCACACGGGAACTTTCATGTCAGATACATGATGAGGCCAAAAAGTTTTCTTACCAAACAGGTGTCAAAGTGGTGGTTGCTTATGGAGGAGCTCCAATCACCCAACAGTTACGGGAGCTTGAGAGAGGAGTTGATATTCTGGTGGCTACTCCAGGAAGATTGGTGGATTTGCTTGAGAGGGCTCGGGTGTCACTGCAGATGATAAGGTATTTGGCCCTTGACGAGGCAGATCGGATGCTGGACATGGGTTTTGAGCCTCAAATAAGGAAGATAGTTGAACAAATGGACATGCCTCCTCCGGGCATGAGACAGACACTGCTGTTTAGTGCCACATTTCCCAAAGAGATACAGAGACTTGCATCGGATTTTCTTTCGAGTTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGATCTAATTGCTCAAAGAGTAGAGTATGTGCTTGAGTCAGACAAGAGAAGCCATCTCATGGATCTTCTTCATGCTCAGAGGGAAAATGGAATTTCTGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCCGATGCTTTGGAACACTGCTTGTGTGTTAATGGATTTCCTGCAGCTAGCATTCACGGTGACAGAACACAACAAGAAAGAGAACTAGCATTGAGGTCGTTCAAGACTGGAAACACACCAATTCTAGTGGCAACGGATGTTGCAGCTCGTGGTCTGGACATCCCTCGGGTAGCACATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTACGTTCATCGAATAGGAAGAACGGGGCGAGCTGGTAAAATGGGATTAGCAACGGCGTTTTTCAATGAAAGTAATTTATCCTTGGCTAAACCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACCCGTTATGCGGCAAGGGCTACTTTCGGTGGTGGCAACAGAAATAGGAGGTCAGGGGGATCCCGTTTTGGTGGTCGTGATTTTAGGAGAGAGGGCTCATTTAATAAATCAACAGATTACTATGGCGGTGGAACTGGTGGTGGAGCTGCTGGGGGATATGGCAATTATGGTGGAGGGTATGGTCAAGGTGTGACAAGTACTTTAATGGTGAAAAGCTGTATCTTCTCAACCATGGTTTGCCTGCATCCATGCATTCCTTACTGCATGAAATCTTTTGTCGTAGGAAAGATTTACCATTGGCTTGGTTTTGCTGGTTAG 1932 0.4793 MRTSWADSADNSAIGSGNGNSSAHPPRGTYVPPHLRNRSLSSEVPAASPAPLPVNDRVNHGGPPPHQGGGYFKADQGRQQGYVSGYQTGGAWNGRGAGRDRGRREVNPFENDEAEDQSSGELENTGINFDAYDDIPVETSGENVPPPVNTFAEIDLGEALNQNIQRCKYVKPTPVQRYAIPISLSGRDLMACAQTGSGKTAAFCFPIISGIMREQYVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPITQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPPPGMRQTLLFSATFPKEIQRLASDFLSSYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQRENGISGKQGLTLVFVETKKGADALEHCLCVNGFPAASIHGDRTQQERELALRSFKTGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNESNLSLAKPLADLMQEANQEVPAWLTRYAARATFGGGNRNRRSGGSRFGGRDFRREGSFNKSTDYYGGGTGGGAAGGYGNYGGGYGQGVTSTLMVKSCIFSTMVCLHPCIPYCMKSFVVGKIYHWLGFAG* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00178 643 FunFam Probable ATP-dependent RNA helicase DDX4 111 366 - -
Lapu7g00178 643 Pfam DEAD/DEAH box helicase 173 353 IPR011545 GO:0003676|GO:0005524
Lapu7g00178 643 Pfam Helicase conserved C-terminal domain 388 503 IPR001650 -
Lapu7g00178 643 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 364 IPR014001 -
Lapu7g00178 643 CDD DEADc_DDX3_DDX4 150 370 IPR044763 GO:0003724|GO:0005524
Lapu7g00178 643 MobiDBLite consensus disorder prediction 97 111 - -
Lapu7g00178 643 MobiDBLite consensus disorder prediction 1 125 - -
Lapu7g00178 643 MobiDBLite consensus disorder prediction 549 569 - -
Lapu7g00178 643 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 117 542 - -
Lapu7g00178 643 Gene3D - 104 366 IPR027417 -
Lapu7g00178 643 SMART ultradead3 168 379 IPR014001 -
Lapu7g00178 643 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 542 IPR001650 -
Lapu7g00178 643 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 149 177 IPR014014 GO:0003724
Lapu7g00178 643 CDD SF2_C_DEAD 376 512 - -
Lapu7g00178 643 SMART helicmild6 422 503 IPR001650 -
Lapu7g00178 643 FunFam ATP-dependent RNA helicase RhlB 367 546 - -
Lapu7g00178 643 Gene3D - 367 546 IPR027417 -
Lapu7g00178 643 MobiDBLite consensus disorder prediction 1 25 - -
Lapu7g00178 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 229 518 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00178 Lapu-Chr7 1871780 1880228 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00178 147 535 Eukaryotic Initiation Factors Gene Family AT3G19760 31.026 2.72e-60 205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00178 K11594 - gmx:100818326 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00178 7 1871780 1880228 Lapu7g00178 7 1871780 1880228 ECH