Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00172 ATGAGGGGAAGAAGCTACAGTTACAGTCCATCACCTCCAAGGCATTATAGCCGAAGAAGGCGCAGTCCCAGCCCTAGGGGCCGTTACAGAGGACGTGATAGGGATTTGCCAACTAGTCTTTTGGTTCGAAACCTCCACAGAGATTGCAGGGCGGAAGATCTGCATGGTCCATTTAGCCAATTTGGTCCTGTTAAGGACGTTTACCTGCCTCGAGATTATTACACCGGGGATCCAAGAGGTTTCGGGTTTGTTCAGTATGTGGACCCAGCTGATGCTGCGGACGCAAAACATCACATGGATGGTCAAATTCTTCTTGGTCGCGAGTTAACAGTAGTGTTTGCTGAAGAAAACAGGAAGAAACCTTCTGAAATGAGAGCAAGGGAACGGAGGAGGGATCGATCATATGATTACAGGCGATCGCCTCGAACCTATTCGCCAAGTCCAGACTATTCACCTTCCCCAAGACGAAGACGACATTACAGGTCAATCTCACCAAGGGTCAGAAAGTATAGCGATCGATCATACTCTAGATCACCTTATGGGTCAAGAATTATAGCAGAAGCAGAAGTTACAGCAGGAGCTTGA 585 0.4803 MRGRSYSYSPSPPRHYSRRRRSPSPRGRYRGRDRDLPTSLLVRNLHRDCRAEDLHGPFSQFGPVKDVYLPRDYYTGDPRGFGFVQYVDPADAADAKHHMDGQILLGRELTVVFAEENRKKPSEMRARERRRDRSYDYRRSPRTYSPSPDYSPSPRRRRHYRSISPRVRKYSDRSYSRSPYGSRIIAEAEVTAGA* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00172 194 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 37 176 - -
Lapu7g00172 194 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 116 IPR000504 GO:0003723
Lapu7g00172 194 SUPERFAMILY RNA-binding domain, RBD 38 142 IPR035979 GO:0003676
Lapu7g00172 194 SMART rrm1_1 39 112 IPR000504 GO:0003723
Lapu7g00172 194 MobiDBLite consensus disorder prediction 118 139 - -
Lapu7g00172 194 MobiDBLite consensus disorder prediction 118 178 - -
Lapu7g00172 194 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 109 IPR000504 GO:0003723
Lapu7g00172 194 MobiDBLite consensus disorder prediction 1 35 - -
Lapu7g00172 194 Gene3D - 32 182 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00172 Lapu-Chr7 1819100 1821511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00172 38 111 Eukaryotic Initiation Factors Gene Family AT3G16380 37.838 9.74e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00172 K12900 - gmx:100816913 232.261