Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00146 ATGGAGGTTCCGGAAATGGGAGGCAAGACCGAAAGTCACATGACATCGGCAGCAGCCTTTGTAGAAGGAGGGATTCAAGAAGCCTGTGATGATTCTTGCAGCATATGCCTTGAGGATTTTTGCAAAAGTGAACCTGCAACTGTCACTAATTGCAAGCATGAGTTCCATCTGCAGTGCATTCTTGAATGGTGTCAGAGAAGCTCTCAATGCCCTATGTGTTGGCAGGCTATCAGCTTGAAGGATGCTACCAGTCAAGAACTGCTCGAGGCAGTAGAGCAGGAGAGGAGCTTGAGGGATACCCCATCAAGAAATGCTGCAATTTTTCATCATTCGGCAGTTGGTGATTTTGAATTGCCAAATTTACCTATGGGACATGAGTCTGATATTGAAGAGCGAATCATTCGACATTTAGCTGCTGCAGCATCAATGAGGAGAGCACACCATCTCAGTCGGAGGGAAAGTCAACGAACTAGGTCATCTGCTCATGGCCATCCACACTACTTAGTGTACTCAACACAGCCTAGTGCACTTCCATCAGCTGCTGGAGGGGGAAGTGAACCAGCTGCAATTCCTGTTGGAAATCCATCTGCTCCTCTTATATTTGATGGTACTGAGCAATCATCGCCACAGCAGATGTCCCGTTTTCAAACTCGAAGTTCATCTCTAACTTCTGACTCCACGGTTGGAACAAGAAATCTTCAAGGAGTTCACTCTAATGATAGAAGCTTTGCGTCACATTCCTTGCCTGCAAGCCAAGACGGAGCACAGCCATCAGAACAATCGTTCTCAGATTCTCTGTTTTCCAGATTTAATGCAGTATCCACGAGATACAAAGAATCAATTTCAAAGGGCACAAGGGGATGGAAGGAGAGGCTGTTCTCTCCTAATTCTTCTATGTCAGAACTTGGTTCAGAAGTTAGGAGAGAATTGAATGCCAAAATTGCTAGTGTGTCCCGATTGATGGAGCGCCTTGAAGCAACAAGAGAAAATAATAGCGCTGCAGGCACTTCTGTATCTAATCATTCCATCGCAGAGACAAGCAACCAAAACAATGTGGAAGTACGTGGAGAGAACTCTTTTCGTGGCAGTAATACCCCAGCTACATTTTCTGCTACCCCAGACTCAAAGTGA 1131 0.4562 MEVPEMGGKTESHMTSAAAFVEGGIQEACDDSCSICLEDFCKSEPATVTNCKHEFHLQCILEWCQRSSQCPMCWQAISLKDATSQELLEAVEQERSLRDTPSRNAAIFHHSAVGDFELPNLPMGHESDIEERIIRHLAAAASMRRAHHLSRRESQRTRSSAHGHPHYLVYSTQPSALPSAAGGGSEPAAIPVGNPSAPLIFDGTEQSSPQQMSRFQTRSSSLTSDSTVGTRNLQGVHSNDRSFASHSLPASQDGAQPSEQSFSDSLFSRFNAVSTRYKESISKGTRGWKERLFSPNSSMSELGSEVRRELNAKIASVSRLMERLEATRENNSAAGTSVSNHSIAETSNQNNVEVRGENSFRGSNTPATFSATPDSK* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00146 376 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 18 81 - -
Lapu7g00146 376 Pfam Ring finger domain 31 73 IPR001841 -
Lapu7g00146 376 MobiDBLite consensus disorder prediction 200 262 - -
Lapu7g00146 376 FunFam E3 ubiquitin-protein ligase RHF2A 5 107 - -
Lapu7g00146 376 MobiDBLite consensus disorder prediction 329 376 - -
Lapu7g00146 376 SUPERFAMILY RING/U-box 25 80 - -
Lapu7g00146 376 ProSiteProfiles Zinc finger RING-type profile. 33 73 IPR001841 -
Lapu7g00146 376 MobiDBLite consensus disorder prediction 144 262 - -
Lapu7g00146 376 Coils Coil 307 327 - -
Lapu7g00146 376 MobiDBLite consensus disorder prediction 327 376 - -
Lapu7g00146 376 SMART ring_2 33 73 IPR001841 -
Lapu7g00146 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 23 92 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00146 Lapu-Chr7 1579994 1585314 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00146 30 81 C3H Transcription Factor Family AT4G00335 46.154 3.89e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00146 K19043 - gmx:100803582 622.083