Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00128 ATGAACGATTTGATCTCCGGTTCCTTCTCTCGCTTCCGTAGCGAGCAGTCCTCCCCGGACCGCCACCACGTCATCGAGATGTCCGCCGCCGGTGACGGCTCCCCCGGCGGAAAAGTGAACCTCGACAAGTTCTTCGAGGACGTGGAGGGCGTCAAGGAGGAGCTCAAGGAGTTGGAGGGACTGGCGCGGAGTCTGAGGAGCAGCCACGAGCAGAGCAAGACGCTGCACAACGCCAACGCCGTCAGGGACCTCCGCTCGCGCATGGACGGCGACGTCTCGCTGGCTCTCAAGAAGGCCAAGCTCATCAAGCTCAAGCTCGAGGCTCTCGACCGCTCCAACGCCGCCAACCGGAACCTGCCTGGCTGCGGACCCGGTTCCTCCTCGGACCGGACCCGGACCTCCGTGGTCAACGGGCTGAAGAAGAAGCTCAAGGACTCCATGGAGAGCTTCAACGAGATTCGCCAGCTCGTGTCGTCGGAGTATCGGGAGACCGTGCAGCGCCGCTACTTCACCGTCACCGGCGAGAATCCTGATGATAACACGCTCGATCTCTTGATCTCCACCGGTGAGAGTGAGACTTTCCTTCAGAAGGCCATTCAAGAGCAAGGCAGGGGTAGGATTCTAGACACCATCAATGAGATTCAAGAGAGGCATGATGCTGTCAAAGAGTTGGAGAAGAGTCTCAAGGAGTTGCACCAAGTGTTCCTTGACATGACGGTATTGGTGCAACATCAAGGTGAGCAATTGGATGATATTGAGAGCCATGTGGCAAGAGCTCAATCGTTTGTGCGCACTGGAGCTGAGCAGTTGCAGACTGCACGAAAGCACCAGAAAAACACCAGGAAATGGACCTGTTATTGTATCATACTTCTTCTGGTGATCATCTTGGTTGTGGTGCTCTTCACTGTGAAGCCATGGGAACATAGCAGTAGTGGTGGCAATGGTGGTAATCAGGCTACTCCAGCTCAAACACCACCTTCGCCTCCACCTCCTGTATTTCTTCCACTATTGCTCTTCCCTTGGTTCTCAAAATTTCGAGACTGCATATACTTTTCCACTTCCCAGGAAATTTCCCACAAACCCATTTCTCCAGTCCCAACCTCCTTTGACCCGTTATCACTTTCTCTGTCTGCCACCATTCCACACATTCTTATTTTTCACACATATTGTAAAGCCACCATTTGTGCAAAGCCCATCAACTTTGCATAA 1209 0.536 MNDLISGSFSRFRSEQSSPDRHHVIEMSAAGDGSPGGKVNLDKFFEDVEGVKEELKELEGLARSLRSSHEQSKTLHNANAVRDLRSRMDGDVSLALKKAKLIKLKLEALDRSNAANRNLPGCGPGSSSDRTRTSVVNGLKKKLKDSMESFNEIRQLVSSEYRETVQRRYFTVTGENPDDNTLDLLISTGESETFLQKAIQEQGRGRILDTINEIQERHDAVKELEKSLKELHQVFLDMTVLVQHQGEQLDDIESHVARAQSFVRTGAEQLQTARKHQKNTRKWTCYCIILLLVIILVVVLFTVKPWEHSSSGGNGGNQATPAQTPPSPPPPVFLPLLLFPWFSKFRDCIYFSTSQEISHKPISPVPTSFDPLSLSLSATIPHILIFHTYCKATICAKPINFA* 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00128 402 Pfam SNARE domain 247 299 IPR000727 -
Lapu7g00128 402 SMART tSNARE_6 206 273 IPR000727 -
Lapu7g00128 402 MobiDBLite consensus disorder prediction 1 20 - -
Lapu7g00128 402 Gene3D - 207 304 - -
Lapu7g00128 402 CDD SNARE_syntaxin1-like 210 272 - -
Lapu7g00128 402 FunFam Syntaxin 132 204 304 - -
Lapu7g00128 402 SUPERFAMILY t-snare proteins 40 266 IPR010989 GO:0016020|GO:0016192
Lapu7g00128 402 Gene3D - 39 171 - -
Lapu7g00128 402 ProSitePatterns Syntaxin / epimorphin family signature. 217 256 IPR006012 GO:0005484|GO:0006886|GO:0016020
Lapu7g00128 402 Coils Coil 211 231 - -
Lapu7g00128 402 Pfam Syntaxin 43 246 IPR006011 GO:0016020
Lapu7g00128 402 CDD SynN 41 198 IPR006011 GO:0016020
Lapu7g00128 402 PANTHER SYNTAXIN 67 294 IPR045242 -
Lapu7g00128 402 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 38 168 - -
Lapu7g00128 402 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 211 273 IPR000727 -
Lapu7g00128 402 Coils Coil 41 68 - -
Lapu7g00128 402 SMART SynN_4 36 162 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00128 Lapu-Chr7 1417505 1423375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00128 33 329 SNARE and Associated Proteins AT3G11820 75.329 3.95e-153 433
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00128 K08486 - gmx:100809258 541.576