Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00123 ATGGAGGAAATTGAAGTGCCTCAATACTTCATCTGCCCCATATCCCTCCAAATCATGAGGGACCCCGTTACGGCCATAACGGGCATAACTTACGATCGAGAAAGCATTGAACAATGGCTATTCAAGAACAAGAACACCACATGCCCTGTGTCCAAACAACTCCTCCCAAGAAACTCTGACCTAACCCCTAACCACACCCTTCGACGCTTGATCCAAGCATGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGCATTCCAACCCCCAAACCCCCTCTCAACAAAATCCAAGTACTTAAACTCCTCAAAGACCTCCACAACCACAAAAGCCTCGTGCAATTGGAGCTTCTTGCGGCGGAGAACGAGAGGAACAAAAAGTGCTTGCTTGAGGCTGGGGTTCCGAGGGCCATGATCATCTTCATCATCAATTGCTATAGAAATGGTCAAATCCAAAAGGGTCTCCAAGAAGCTCTTAGCATATTGCAATTTGTCAAGATCCCCAAGAAGGAATGGCCGTTGGTTGTGAAGGACCACGACCAAACATTGGATTCTCTGACATGGATTCTATGCCAAGAGGAAATGGAAAACTCCATTGATGTGAAATCCCATGCGGTTCTACTCCTAAAAAGGATCGTCAACAAGGGCGACACGTGTCACGTTCTGGAAAGACTGAAACCCGAATTCTTCGAAACAATGGTGAAGATTCTGAGACACGGAGTGACCCAACAAGGAGTGAGTGCAGCACTTGACGTTCTGTTAAGCGCTTCTTCTTCGACGCGAAACAGGATCATGATGGTGGAAGCAGGTGTGGTTCACGAACTCGTGGAGATCGAGCTGGGGGCGCCGGAGAAGAGAGTCACGGAACTAACGCTAGCTATACTGTTCCACTTGTGTTGCTGCGCCAACGGAAGAGCCAAGTTTTTGGGCCATGAAGGGTCCATCGCGGTGGTGACGGAGAGGATACTGAAGGTGTCTGCGGCGGTGGACGACAGGGCCGTGTTTGTTTTGGCGATGGTTGCTAAGTTTTCGGGGACAAAGGTGGTTTTGCAGGAGATGTTGAAGGTGGGAAGCATGGCCAAGCTTTGCATGGTGCTTCAGGCTGATAGGGCCAAGTATTTGAAGGACAAAGCCATGGAAATTCTGAAGGAACACTCAGAGGTTTGGAGCGATTCGCCTTGCTTTCCTCGTTCGTCCTTTTGTGCGTACGTTCGGTACTGA 1218 0.4943 MEEIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFKNKNTTCPVSKQLLPRNSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLNKIQVLKLLKDLHNHKSLVQLELLAAENERNKKCLLEAGVPRAMIIFIINCYRNGQIQKGLQEALSILQFVKIPKKEWPLVVKDHDQTLDSLTWILCQEEMENSIDVKSHAVLLLKRIVNKGDTCHVLERLKPEFFETMVKILRHGVTQQGVSAALDVLLSASSSTRNRIMMVEAGVVHELVEIELGAPEKRVTELTLAILFHLCCCANGRAKFLGHEGSIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKVGSMAKLCMVLQADRAKYLKDKAMEILKEHSEVWSDSPCFPRSSFCAYVRY* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00123 405 PANTHER WDSAM1 PROTEIN 2 395 IPR045185 GO:0061630
Lapu7g00123 405 Pfam U-box domain 6 78 IPR003613 GO:0004842|GO:0016567
Lapu7g00123 405 SMART Ubox_2 9 74 IPR003613 GO:0004842|GO:0016567
Lapu7g00123 405 Gene3D - 97 390 IPR011989 -
Lapu7g00123 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 78 IPR013083 -
Lapu7g00123 405 SUPERFAMILY ARM repeat 114 371 IPR016024 -
Lapu7g00123 405 ProSiteProfiles U-box domain profile. 5 81 IPR003613 GO:0004842|GO:0016567
Lapu7g00123 405 SUPERFAMILY RING/U-box 3 79 - -
Lapu7g00123 405 CDD RING-Ubox_WDSUB1-like 7 64 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00123 Lapu-Chr7 1340502 1342070 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00123 2 394 U-box Gene Family AT3G11840 41.950 9.12e-116 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00123 - - gmx:100798446 655.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00123 7 1340502 1342070 Lapu7g00123 7 1340502 1342070 ECH
Lapu6g01021 6 10291629 10293192 Lapu7g00123 7 1340502 1342070 PCT