LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g00123	ATGGAGGAAATTGAAGTGCCTCAATACTTCATCTGCCCCATATCCCTCCAAATCATGAGGGACCCCGTTACGGCCATAACGGGCATAACTTACGATCGAGAAAGCATTGAACAATGGCTATTCAAGAACAAGAACACCACATGCCCTGTGTCCAAACAACTCCTCCCAAGAAACTCTGACCTAACCCCTAACCACACCCTTCGACGCTTGATCCAAGCATGGTGCACCCAAAACGCTTCACTTGGCATCGTTCGCATTCCAACCCCCAAACCCCCTCTCAACAAAATCCAAGTACTTAAACTCCTCAAAGACCTCCACAACCACAAAAGCCTCGTGCAATTGGAGCTTCTTGCGGCGGAGAACGAGAGGAACAAAAAGTGCTTGCTTGAGGCTGGGGTTCCGAGGGCCATGATCATCTTCATCATCAATTGCTATAGAAATGGTCAAATCCAAAAGGGTCTCCAAGAAGCTCTTAGCATATTGCAATTTGTCAAGATCCCCAAGAAGGAATGGCCGTTGGTTGTGAAGGACCACGACCAAACATTGGATTCTCTGACATGGATTCTATGCCAAGAGGAAATGGAAAACTCCATTGATGTGAAATCCCATGCGGTTCTACTCCTAAAAAGGATCGTCAACAAGGGCGACACGTGTCACGTTCTGGAAAGACTGAAACCCGAATTCTTCGAAACAATGGTGAAGATTCTGAGACACGGAGTGACCCAACAAGGAGTGAGTGCAGCACTTGACGTTCTGTTAAGCGCTTCTTCTTCGACGCGAAACAGGATCATGATGGTGGAAGCAGGTGTGGTTCACGAACTCGTGGAGATCGAGCTGGGGGCGCCGGAGAAGAGAGTCACGGAACTAACGCTAGCTATACTGTTCCACTTGTGTTGCTGCGCCAACGGAAGAGCCAAGTTTTTGGGCCATGAAGGGTCCATCGCGGTGGTGACGGAGAGGATACTGAAGGTGTCTGCGGCGGTGGACGACAGGGCCGTGTTTGTTTTGGCGATGGTTGCTAAGTTTTCGGGGACAAAGGTGGTTTTGCAGGAGATGTTGAAGGTGGGAAGCATGGCCAAGCTTTGCATGGTGCTTCAGGCTGATAGGGCCAAGTATTTGAAGGACAAAGCCATGGAAATTCTGAAGGAACACTCAGAGGTTTGGAGCGATTCGCCTTGCTTTCCTCGTTCGTCCTTTTGTGCGTACGTTCGGTACTGA	1218	0.4943	MEEIEVPQYFICPISLQIMRDPVTAITGITYDRESIEQWLFKNKNTTCPVSKQLLPRNSDLTPNHTLRRLIQAWCTQNASLGIVRIPTPKPPLNKIQVLKLLKDLHNHKSLVQLELLAAENERNKKCLLEAGVPRAMIIFIINCYRNGQIQKGLQEALSILQFVKIPKKEWPLVVKDHDQTLDSLTWILCQEEMENSIDVKSHAVLLLKRIVNKGDTCHVLERLKPEFFETMVKILRHGVTQQGVSAALDVLLSASSSTRNRIMMVEAGVVHELVEIELGAPEKRVTELTLAILFHLCCCANGRAKFLGHEGSIAVVTERILKVSAAVDDRAVFVLAMVAKFSGTKVVLQEMLKVGSMAKLCMVLQADRAKYLKDKAMEILKEHSEVWSDSPCFPRSSFCAYVRY*	406

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu7g00123	405	PANTHER	WDSAM1 PROTEIN	2	395	IPR045185	GO:0061630
Lapu7g00123	405	Pfam	U-box domain	6	78	IPR003613	GO:0004842\|GO:0016567
Lapu7g00123	405	SMART	Ubox_2	9	74	IPR003613	GO:0004842\|GO:0016567
Lapu7g00123	405	Gene3D	-	97	390	IPR011989	-
Lapu7g00123	405	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1	78	IPR013083	-
Lapu7g00123	405	SUPERFAMILY	ARM repeat	114	371	IPR016024	-
Lapu7g00123	405	ProSiteProfiles	U-box domain profile.	5	81	IPR003613	GO:0004842\|GO:0016567
Lapu7g00123	405	SUPERFAMILY	RING/U-box	3	79	-	-
Lapu7g00123	405	CDD	RING-Ubox_WDSUB1-like	7	64	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu7g00123	Lapu-Chr7	1340502	1342070	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu7g00123	2	394	U-box Gene Family	AT3G11840	41.950	9.12e-116	343

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu7g00123	-		-	gmx:100798446	655.21

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu7g00123	7	1340502	1342070	Lapu7g00123	7	1340502	1342070	ECH
	Lapu6g01021	6	10291629	10293192	Lapu7g00123	7	1340502	1342070	PCT

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