Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00122 ATGGCGACATATTTTCAAAGTAACTCCAAAATTCAAGCAGGTGCCGACGGTCTTCAAACTCTCGTACTAATGAACCCTGAGTATGCCCAATACTCTGACGCGCCGCCGCCACCCCACGGCGGAAACCACTTGTTTCTCAACTCCGCCGCCACCGTTGCCAACAACACCTCCCTACAGAACCTCCCCCACGCGCCGTCCCCTCACACTCAGCAATTCGTCGGCGTGCCGCTCTCCGCCGCAGCGCAGGAGCCGCCGCCGCCATCCATGCCCCATGACGTCTCCGCCCTGCATGGCTTCCTGCCGCGCATGCAGTACAACCTTTGGAACACAATTGACCCCAGCACGGCGGCGCGTGAGGTCCCACGCGCCTCTCAGGGACTGTCACTTAGTCTGCACGGTGAGGAGGTCCGTGCATCGACGTCCTCCGCTTCCGGGGCTTCCAACGGCGGCGGTGTGGTGGGGATTCAGAGTGTACTCTTGAGTTCCAAGTACTTGAAGGCCACGCAAGAACTTCTGGACGAGGTTGTGAATGTTAACGGCGGAATTAAGGTTGAACAAGCGAAGAAGAGCTTCGAGAAAACTAAGGTGGTTGGAGAATCATCAAACGCCGCTAGTGGCGACGGCGGAGAGGGAAGTGGGAAACGTAGCTCTGAGTTATCAACTACAGAGAGACAAGAAATTCAGATGAAGAAAGCAAAGCTAATCAACATGCTTGATGAGGTGGAGCAAAGGTACAGGCAGTACCACAACCAGATGCAGATTGTGACATCCTCTTTTGAGCAAGTTGCAGGGATTGGTTCTGCGAGGACTTACACTGCACTTGCATTGCAAACAATTTCAAAGCAATTTCGATGTTTGAAGGATGCTATAACAGGTCAAATCAGAGCTGCAAATAGGAGTTTGGGAGAAGAGGATTGTTTTGGGACTAAAGTTGAAGGTTCTAGGCTCAAATACGTGGATCATCATCTACGGCAACAGAGAGCTATTCAGCAATTGGGAATGATCCATCACAATGCTTGGAGACCCCAGAGAGGATTGCCAGAGAGATCGGTTTCTGTCTTACGTGCTTGGCTCTTTGAACACTTTCTCCACCCCTACCCCAAGGACTCCGACAAACACATGCTTGCTAAACAAACAGGGCTTACCAGGAGTCAGGTTTCAAATTGGTTCATAAATGCTCGAGTTCGGCTTTGGAAGCCAATGGTGGAGGAAATGTACTTGGAGGAGATGAAAGAACACGAACTGAATGGATCTGAGGAGAAATCAAGCAAGAGTGGTGAAGATCCTGCGATGAAAAATTCAACTCCACAAGAGAAACGTCCTACCTCTGAAATTGAATCGAACAGTTTTAGTTCTAAACGAGATGCTTCTAAAAATCAGAACAATTCAATAGTTTCAACTTCACCATCAACATCACCTATAGGGGGAAATGTCAAGAATCAATCAGGATTCAGTTTCATTGGGTCATCAGAGTTAGATGGAATCACACAAGGAAGCCCCAAGAAACCAAGGAACCATGAAATTCTACACTCTCCAAATCGTGCTTCTTCAATCAACATGGATGTTAAAGCCAATGAGGCAAACAATGAACAACAACTCTCAATGGATGAGAGACAGAGTAGGGATGGCTACTCTTTCATGGGAAGCCAAACAAACTTCATTGGTGGTTTTGGACAATACCCAATGGAGGAAATTGGTAGGTTTGATGCTGAGCAATTCACACCAAGGTTTTCAGGTAATGGCGTTTCCCTCACTCTTGGTCTTCCTCATTGTGACACATTGTCAGGAACACATCAGCCCTTTCTCCCAAACCAAAACATTCAGCTAGGAAGAGGGTTGGACATTGGTCAACCAAATCAATTTGGTGTCTTAAACAATTCCACTTCTCACTCTTCAGCAGCATTTGAGAGTATCAACATGCAGAACCCAAAGAGGTTTGCTGCACAATTGGTACTAGACTTTGTGGCCTAA 1971 0.4784 MATYFQSNSKIQAGADGLQTLVLMNPEYAQYSDAPPPPHGGNHLFLNSAATVANNTSLQNLPHAPSPHTQQFVGVPLSAAAQEPPPPSMPHDVSALHGFLPRMQYNLWNTIDPSTAAREVPRASQGLSLSLHGEEVRASTSSASGASNGGGVVGIQSVLLSSKYLKATQELLDEVVNVNGGIKVEQAKKSFEKTKVVGESSNAASGDGGEGSGKRSSELSTTERQEIQMKKAKLINMLDEVEQRYRQYHNQMQIVTSSFEQVAGIGSARTYTALALQTISKQFRCLKDAITGQIRAANRSLGEEDCFGTKVEGSRLKYVDHHLRQQRAIQQLGMIHHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYLEEMKEHELNGSEEKSSKSGEDPAMKNSTPQEKRPTSEIESNSFSSKRDASKNQNNSIVSTSPSTSPIGGNVKNQSGFSFIGSSELDGITQGSPKKPRNHEILHSPNRASSINMDVKANEANNEQQLSMDERQSRDGYSFMGSQTNFIGGFGQYPMEEIGRFDAEQFTPRFSGNGVSLTLGLPHCDTLSGTHQPFLPNQNIQLGRGLDIGQPNQFGVLNNSTSHSSAAFESINMQNPKRFAAQLVLDFVA* 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00122 656 SMART prehox3 153 292 IPR006563 -
Lapu7g00122 656 SMART HOX_1 340 404 IPR001356 GO:0003677
Lapu7g00122 656 SUPERFAMILY Homeodomain-like 341 407 IPR009057 -
Lapu7g00122 656 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 427 - -
Lapu7g00122 656 MobiDBLite consensus disorder prediction 428 496 - -
Lapu7g00122 656 MobiDBLite consensus disorder prediction 195 223 - -
Lapu7g00122 656 CDD homeodomain 340 401 IPR001356 GO:0003677
Lapu7g00122 656 Gene3D - 336 413 - -
Lapu7g00122 656 ProSiteProfiles 'Homeobox' domain profile. 337 400 IPR001356 GO:0003677
Lapu7g00122 656 MobiDBLite consensus disorder prediction 412 519 - -
Lapu7g00122 656 MobiDBLite consensus disorder prediction 412 427 - -
Lapu7g00122 656 Coils Coil 224 251 - -
Lapu7g00122 656 FunFam BEL1-like homeodomain protein 9 343 405 - -
Lapu7g00122 656 Pfam Associated with HOX 158 291 IPR006563 -
Lapu7g00122 656 Pfam Homeobox KN domain 357 396 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00122 Lapu-Chr7 1328957 1334523 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00122 1 656 Homeobox Transcription Factor Family AT2G35940 50.068 8.61e-174 509
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu7g00122 POX 4.2e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00122 - - gmx:100810851 1121.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00122 7 1328957 1334523 Lapu7g00122 7 1328957 1334523 ECH
Lapu6g00704 6 7410926 7415946 Lapu7g00122 7 1328957 1334523 PCT