Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00106 ATGTCCACCGCCGCCGGACCTGCCGACCGCCGTGCTTCGCCGCCGCGGGGGCCTTCCGGCACCCCCGCTCGCCCACCTCTTAAGCGCCACCTCGCTTTCGTCACCAAACCGCCCTTTGCTCCCCCGGACGACTACCACAGCTTCTCCTCCATCGACTCCCGCCGCCTGGTCGATGAAGCCGTTGTGGTTAGATCTCCGTACATGAAGCGAAAGGGTGGAATGAACGACAGTGAAGGAGAGTCTCACGCACCAAAGTGGAGTAGCAGTCCTGGATACACTAATATTAGTAACATAACCAGTAGTCCCTTTAAAACTCCAGTGTCTGCAAAAGGGGGAAGGACACAGAAGGCAAAGGCTTCCAAAGAAGGCAGATCGTGTCCTCCAACACCCATCTCAAATGCTGGTTCCCCTTCTCCTCTTACTCCTGCCAGCAGCTGTCGTTATGACAGTTCATTAGGTCTCTTAACCAAGAAGTTCATCAATTTGGTCAAGCATGCAGAGGATGGTATTCTCGATCTAAATAAAGCAGCTGAGACTTTGGAGGTGCAAAAGAGGAGGATATATGACATAACTAATGTATTGGAAGGCATTGGTCTCATTGAAAAGAAGCTCAAAAACAGAATACACTGGAAGGGAATTGAATCTTCCACGTCTGGTGAAGTGGATGGTGATATCTCTGTGCTTAAGGAAGAAGTTGAGAAACTTTCTTTGGAGGAGCAGGGATTAGATGATCAAATAAGGGAAATGCAAGAAAGGTTGAGGAGGTTGAGTGAAAATGAAAACAACCAGAAGTGTCTTTTCGTGACTGAGGATGATATTAAGAACCTACCTTGCTTCCAGAACGAAACTTTAATAGCAATTAAAGCGCCGCATGGAACTACCCTGGAAGTCCCTGATCCTGAGGAAGCTGTAGACTATCCTCAGAGGAGATATAGGATCATTCTTAGAAGCACAATGGGCCCCATTGATGTTTACCTTATCAGTCAATTTGAAGAGAAATTTGAAGAGATTAATGGTGCTGAGCTCCCCATGATCCCACTTGCTTCCAGTTCTGAGTCCAACGAACAACTAATGACAGAAATAGTTCCTGCTGAATGCAGCGGAAAGGAATATGAACCTCAAACTCAGCTCTCTTCTCATGCATACTCCGATCTAAATGCTTCGCAAGAGTTTGCCAGTGGCATGATGAAGATTGTCCCTTCAGATGTTGATAATGACGCAGATTATTGGCTTCTATCAGATGCTGATGTTAGTATAACAGACATGTGGAGAACAGATTCCACTGTTGATTGGAATGGGGTAGACATGCTTCATCCTGATTTTGGAATCATTTCTAGGCCTCAAACTCCATCATCTGGGTTTGTTGAAGTGCCAACACCAGGAGTAAACTCTAATCAGAAGTGA 1404 0.4637 MSTAAGPADRRASPPRGPSGTPARPPLKRHLAFVTKPPFAPPDDYHSFSSIDSRRLVDEAVVVRSPYMKRKGGMNDSEGESHAPKWSSSPGYTNISNITSSPFKTPVSAKGGRTQKAKASKEGRSCPPTPISNAGSPSPLTPASSCRYDSSLGLLTKKFINLVKHAEDGILDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKLKNRIHWKGIESSTSGEVDGDISVLKEEVEKLSLEEQGLDDQIREMQERLRRLSENENNQKCLFVTEDDIKNLPCFQNETLIAIKAPHGTTLEVPDPEEAVDYPQRRYRIILRSTMGPIDVYLISQFEEKFEEINGAELPMIPLASSSESNEQLMTEIVPAECSGKEYEPQTQLSSHAYSDLNASQEFASGMMKIVPSDVDNDADYWLLSDADVSITDMWRTDSTVDWNGVDMLHPDFGIISRPQTPSSGFVEVPTPGVNSNQK* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00106 467 MobiDBLite consensus disorder prediction 126 142 - -
Lapu7g00106 467 Coils Coil 225 266 - -
Lapu7g00106 467 MobiDBLite consensus disorder prediction 1 29 - -
Lapu7g00106 467 Gene3D - 141 214 IPR036388 -
Lapu7g00106 467 MobiDBLite consensus disorder prediction 65 142 - -
Lapu7g00106 467 Gene3D - 219 329 - -
Lapu7g00106 467 CDD E2F_DD 225 329 IPR032198 GO:0046983
Lapu7g00106 467 MobiDBLite consensus disorder prediction 448 467 - -
Lapu7g00106 467 SUPERFAMILY E2F-DP heterodimerization region 225 329 IPR037241 -
Lapu7g00106 467 FunFam E2F transcription factor 1 141 214 - -
Lapu7g00106 467 SUPERFAMILY "Winged helix" DNA-binding domain 147 210 IPR036390 -
Lapu7g00106 467 Pfam E2F transcription factor CC-MB domain 228 328 IPR032198 GO:0046983
Lapu7g00106 467 SMART E2F_TDP_2 147 212 IPR003316 GO:0005667|GO:0006355
Lapu7g00106 467 Pfam E2F/DP family winged-helix DNA-binding domain 149 212 IPR003316 GO:0005667|GO:0006355
Lapu7g00106 467 PANTHER TRANSCRIPTION FACTOR E2F 84 429 IPR015633 GO:0000978|GO:0006357
Lapu7g00106 467 MobiDBLite consensus disorder prediction 81 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00106 Lapu-Chr7 1121907 1127036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00106 19 464 E2F-DP Transcription Factor Family AT2G36010 56.092 1.16e-161 464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lapu7g00106 E2F_CC-MB 4.5e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00106 K06620 - gmx:100811762 849.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00106 7 1121907 1127036 Lapu7g00106 7 1121907 1127036 ECH