Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00079 ATGCCAATGGAATGGGCAAAGATTGTGATTCCGCTTATGCGCTCTGGAAAGGTCAAGGTTCGAGGCCGATGCATTGCTGCGCCAGATAAACTGGAAATGATGCAAGAGATTATGCTTTTAGTGAGCTTTTATATTCACAAGTCTGTTTTTGCTGACCGTGTTGACACCTCTTGGAGGCTAGAGGCTTGTGGTAAAATTGATGATACTATTTATCCACTTCTTGCCCTACTAAATATGTTACAGATCAAGCCATGTCAAAAGGCAGAATTCACGCCAGAAGATATAGATTCTCGAAAGCGGTTGCTCTATCCAAGTGCTGAGTCAGATGAAGCTGCAGCATTGCCTTTGATCAAGCGAAGAAAGGGCGGCGAGCCTATTCCAGAGCAAAACAATGACGAACAAGCTCTTTCAGAGTCAGCTTTGAACAAAATTGTTGGAGCTGCAGAAATCTATGACTTGAAGGAGAAGGAAGCCCCAAAGACACTTATGTGTAATCTCAAGCCTTACCAGAAGCAAGCCCTGTATTGGATGGGTGAAATCGAGAAGGGAATGGATGTTGAGAGTGCAGAAAGAAATCTGCATCCCTGCTGGTCAGCCTACGCTATATGCATGGGAAGGACTATTTATGTCAACATATTTACCGGAGAAGCTTCAAAGAAATTTCCCAAATCAACTGAGATGGCTAGAGGAGGAATTCTAGCGGATGCAATGGGACTTGGAAAGACCGTTATGACAATTGCTCTGATACTCAGTAATCCAGGCAGAGGGAACTCAGAAAACAAGGATGCAAATAATGGATATGATAATGTTATCGGAAATAAAAGAAAGAACGCTAACGCGATGAATAAACTCGAGGGTGGCACTCTTATTGTTTGTCCCATGGCTTTGTTAGGTCAATGGAAGGCGAGTGATGAGCTTGAAACGCATTCAAAGCCCGGTAGTATATCCATATTTGTTCATTATGGTGGCGGAAGAACCGATGATCCCTCGTTGATCTCAGGTCATGATGTTGTCTTAACAACTTATGGTGTCCTATCAGCTGCATACAAAGATAATGGAGATAATAGCATCTACCACAAGGTCCACTGGTACAGGGTGGTTCTAGACGAAGCTCATAATATAAAAGCCCATAGAAGTCAGATTTCCCAGGCTGCTTTTGCTCTCTCATCACACAGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTGGAAGACCTATACAGTCTCTTGTGTTTCTTGCGTGTTGAACCTTGGTGCAACTGGGCATGGTGGCAGAAGTTGATTCAAAGGCCTTATGAGAATGGTGATCCAAGATCTCTGAAGTTGGTCAAGGCCATTTTGAGGATGATAATGCTAAGAAGAACGAAGGAATCGAAGGATGAGGAGGGAAGGCCTATACTTTTCCTGCCTCCAATTGATATTGAATTGATTGAATGTAAACAATCAGAATCTGAACGCGACTTCTATGAAACCCTTTTCGAGAGATCTAAAATTCAATTTGATCAGTACGTTGCACAAGGAAAGGTTCTACACCATTATGCCAATATTCTTGACCTTCTAATGCAGTTGAGACGCTGTTGTAACCATCCGTTTTTGGTTATGTGCGGAAGCGGTTCCCAGAAGTATGCAGACTTGGGCAGACTCGCAAGAAGATTTCTTCAGTCTAATACTGAATCACCCGACGAAAGCAATCAAGATGATCCACAGCAGCAAGCAGAGCTGAACAAACTTACAAGAATATTACTTCTAAAATCTGCTTCGTCGAACACTATCCAACCCCGCGCATACATTGAAGAGGTTTTGGAGAATATTCAAAAGGGCAACATTGTAGAATGCTCTATATGTTTGGAATCTCCAGAAGATCCTGTGTTTACACCATGTGCTCATAAATTTTGTAGAGAATGTCTGTTCAGTTGCTGGGGCACCTCAGCGGGTGGCAAATGTCCAATCTGTCGTAAATTGCTCCAGAAAGATTATCTGATCGCTTGTCCGTCTGAAAGCCCATTCAAGGTCGATATTAAGAACAATGTGACCGAATCTTCGAAGGTTTCAAAGCTATTCGAATTCCTGGAACGTATTCTGAACTCGCCCTCGGGTGAAAAGAGTATTGTCTTCAGTCAGTGGACTTCATTTTTTGATCTCTTGGAGAATCCATTGAGGCGGAGAGGCATTGGCTTTTTGAGATATGATGGGAAATTGACGCAGAAACAGAGGGAGAAAGTTCTGGATGAATTCAATGAGACAAGGGAGAAAAGGGTTTTGCTGATGTCGCTAAAGGCTGGTGGTGTTGGCTTGAACTTAACTGCAGCCTCGAATGTTTTCATTATGGATCCATGGTGGAATCCTGCTGTTGAGGAGCAAGCAATAATGAGAATTCATCGCATAGGACAAAACCGAAGAGTTAAAGTAAGAAGATTCATTGTCAAGGACACTGTGGAAGATCGATTGCAACAAGTGCAGGCCAGGAAACAAAGTCTGATATCTGGTACCCTAACCGATGATGAGGTTCGATCTGCTAGGATCCAAGACCTCAAAATGCTATTCACGTGA 2556 0.4311 MPMEWAKIVIPLMRSGKVKVRGRCIAAPDKLEMMQEIMLLVSFYIHKSVFADRVDTSWRLEACGKIDDTIYPLLALLNMLQIKPCQKAEFTPEDIDSRKRLLYPSAESDEAAALPLIKRRKGGEPIPEQNNDEQALSESALNKIVGAAEIYDLKEKEAPKTLMCNLKPYQKQALYWMGEIEKGMDVESAERNLHPCWSAYAICMGRTIYVNIFTGEASKKFPKSTEMARGGILADAMGLGKTVMTIALILSNPGRGNSENKDANNGYDNVIGNKRKNANAMNKLEGGTLIVCPMALLGQWKASDELETHSKPGSISIFVHYGGGRTDDPSLISGHDVVLTTYGVLSAAYKDNGDNSIYHKVHWYRVVLDEAHNIKAHRSQISQAAFALSSHSRWCLTGTPLQNSLEDLYSLLCFLRVEPWCNWAWWQKLIQRPYENGDPRSLKLVKAILRMIMLRRTKESKDEEGRPILFLPPIDIELIECKQSESERDFYETLFERSKIQFDQYVAQGKVLHHYANILDLLMQLRRCCNHPFLVMCGSGSQKYADLGRLARRFLQSNTESPDESNQDDPQQQAELNKLTRILLLKSASSNTIQPRAYIEEVLENIQKGNIVECSICLESPEDPVFTPCAHKFCRECLFSCWGTSAGGKCPICRKLLQKDYLIACPSESPFKVDIKNNVTESSKVSKLFEFLERILNSPSGEKSIVFSQWTSFFDLLENPLRRRGIGFLRYDGKLTQKQREKVLDEFNETREKRVLLMSLKAGGVGLNLTAASNVFIMDPWWNPAVEEQAIMRIHRIGQNRRVKVRRFIVKDTVEDRLQQVQARKQSLISGTLTDDEVRSARIQDLKMLFT* 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00079 851 ProSiteProfiles Zinc finger RING-type profile. 614 654 IPR001841 -
Lapu7g00079 851 SMART helicmild6 715 798 IPR001650 -
Lapu7g00079 851 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 687 847 IPR001650 -
Lapu7g00079 851 SMART ultradead3 162 435 IPR014001 -
Lapu7g00079 851 SUPERFAMILY RING/U-box 613 660 - -
Lapu7g00079 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 468 840 IPR027417 -
Lapu7g00079 851 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 456 IPR027417 -
Lapu7g00079 851 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 222 418 IPR014001 -
Lapu7g00079 851 Gene3D - 661 849 IPR027417 -
Lapu7g00079 851 ProSitePatterns Zinc finger RING-type signature. 629 638 IPR017907 -
Lapu7g00079 851 CDD DEXDc_SHPRH-like 166 456 - -
Lapu7g00079 851 FunFam DNA repair protein RAD5B 219 457 - -
Lapu7g00079 851 Gene3D - 472 600 IPR027417 -
Lapu7g00079 851 Gene3D - 216 457 IPR038718 -
Lapu7g00079 851 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 37 851 - -
Lapu7g00079 851 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 601 660 IPR013083 -
Lapu7g00079 851 SMART ring_2 614 653 IPR001841 -
Lapu7g00079 851 Pfam SNF2-related domain 169 534 IPR000330 GO:0005524|GO:0140658
Lapu7g00079 851 CDD SF2_C_SNF 676 809 - -
Lapu7g00079 851 Pfam Helicase conserved C-terminal domain 690 798 IPR001650 -
Lapu7g00079 851 Pfam Zinc finger, C3HC4 type (RING finger) 614 653 IPR018957 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00079 Lapu-Chr7 810698 816091 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00079 1 850 RAD5 or RAD16-like Gene Family AT5G43530 64.019 0.0 1139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu7g00079 SNF2_N 1.6e-78 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00079 K15505 - gmx:100806677 1508.81