Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00072 ATGGATTTTGTGAGCCAAAGACACCTACTTCATGTACCAACACAAGCCAATTCACCTTGCACATTTCCTCCAAATCATGATATTCCACATCCTTCTAGTTCAAATTTTCCCCTCTTAGCAATCCTTCTGGTAGGAATGATGTTTACAAGTTTCTTCCTTATAGGATACTACATGATAGTTGTCAAGTGCTGCTTCAATTGGCCCCATGTTGATCCATCTGCTGGATACTCAGCAGCATCTGAGCCTAGAGGGTTAGAGGAATCAGTGATTAGGTTAATCCCTGTGATTCATTACAAGAGAGAAGAAGGTGACACAAACTTTGGTGAAAGAAGCATAGGTGATTGTGCAGTTTGCTTGAGTGAGTTTCAACAAGATGAGAAGCTGAGGGTTATACCAAACTGTAGCCATGTCTTTCACATTGATTGCATAGATGTTTGGCTTCTTAACAATACTCATTGCCCCCTTTGTAGAAGAATTGTGTCCTTGACAAGCCAAGTCCATGTTGACCAACTAAACCTTCTCAGTCCAAGGCCTTCCCCACAGGACCAAAGCCAAAACATTGAAAACCATGTTAGTGAGGAAGTTTCTGTAGTGATTGATTTGGATGGTGATCAACTTGATAGAGACCAAAACTTGCAAGGAAGACAAGAGTTACCTACTAATAGTGTTTCTTCACAAAGGAAGTTGTTGGAGCAGAAGAAAGCAAAGAAGCTTCATAAAGTGAGCAGCTTGGGAGATGAGTGTATTGGCATCAGAGCCAAAGGTGAAAGGCTCTCAGTTCAAGCCATGAGGAGGTCTTTTTCCATGGACTCATCAGTGGATAGAAAGTTTTATGGGGCAATTCATCAGCAAGGGCATGTCCATGAGATCAACACAATTGAAGCTTGTGGTGGTGGAAGTGGCAGAGTCAAGAGATCATTCTTTTCTTTTGGACATGGAAGCAAATCAAGAACTGCTGTACAACCTGTTTATTTGGACCCCTGA 984 0.4187 MDFVSQRHLLHVPTQANSPCTFPPNHDIPHPSSSNFPLLAILLVGMMFTSFFLIGYYMIVVKCCFNWPHVDPSAGYSAASEPRGLEESVIRLIPVIHYKREEGDTNFGERSIGDCAVCLSEFQQDEKLRVIPNCSHVFHIDCIDVWLLNNTHCPLCRRIVSLTSQVHVDQLNLLSPRPSPQDQSQNIENHVSEEVSVVIDLDGDQLDRDQNLQGRQELPTNSVSSQRKLLEQKKAKKLHKVSSLGDECIGIRAKGERLSVQAMRRSFSMDSSVDRKFYGAIHQQGHVHEINTIEACGGGSGRVKRSFFSFGHGSKSRTAVQPVYLDP* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00072 327 CDD RING-H2_EL5-like 114 157 - -
Lapu7g00072 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 161 IPR013083 -
Lapu7g00072 327 Pfam Ring finger domain 114 157 IPR001841 -
Lapu7g00072 327 SUPERFAMILY RING/U-box 114 163 - -
Lapu7g00072 327 PANTHER RING-H2 FINGER PROTEIN ATL16 20 323 IPR044600 GO:0016567|GO:0016740
Lapu7g00072 327 FunFam E3 ubiquitin-protein ligase ATL6 74 163 - -
Lapu7g00072 327 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lapu7g00072 327 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00072 Lapu-Chr7 778630 779631 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00072 32 327 C3H Transcription Factor Family AT1G04360 38.395 1.29e-63 204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00072 7 778630 779631 Lapu7g00072 7 778630 779631 ECH