Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00061 ATGGCGTTAATTACATTAAAAAAGGGCACTCAGTTAGTAAAGTATTGTCGAAAAGGGAAGCCGAAATTTTGTTCGTTCAGACTCTCATCGGATGAAACAAAACTGATTTGGATTTCTCATGGAAAGGAAAAGACTCTAAAATTAGCTTCTGTTTCACACATCCTCCCAGGACAGAGAACAGCTGTCTTTAGAAGATACTTGCGTCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAGAAGGGGGAACGATCACTTGATCTGATTTGCAAGGACCAAGCAGAGGTAGAGATATGGTTTTCAACCCTTAAGGCATTAATTTCCACCGGAGAGCGTATTAGGCGAGGAATAAGTAATTTAAGCAACGATAGTGTTGACTTTGTTGCTGGAACACTAGAGTTTGCATCAAGCATTGCCCGTAGCAGGTGTTCTTTTGAATCGGTATCTCATGAATCTTCATCATCTTGGTCAAGATCAGAGACAAGTATGCCAATACGGACAAGTGTTGGAGATGGTTCTCGCGTTAGTGTATCAAGTAGTGTAGGATCAGGGATAGATGACATAGAATCTCTTGGTGATGTTTTTATATGGGGAGAGGTTTGGGCAGATGGCAATTCATTTGACGGATTGGGGAGTCAAGCCACTTACAAGATTGATGTGCTGAGTCCTAAGCCATTAGAATCTGATGTTGTTCTTGATGTTAATCAGATTGGGCCTGGTGTACGTCACATTGGTTTAGTTACAAGGCAAGGAGAGGTTTTTACATGGGGAGAGGACTCTGGTGGAAGGCTTGGCCATGGATTAGAAAAAGATTTTGGTCGACCTCATCTTGTAGAGTCCCTAGCAATTACCAACGTGAATTTTGTTGCATGTGGAGAATATCATTCGTGTGCTGTGTCTGTATCTGGTGACCTGTTCACCTGGGGTGATGGTACAAAATGTGCAGGACTTCTTGGTCATGGAAGTGATGTTAGCTACTGGATACCAAAGAGGGTCAGTGGCCTTTTAGATGGACATCAGGTCGTATCCGTAGCATGTGGCGCATGGCATTCAGCATTAGCAACCTCCCATGGGAAATTGTTTACCTTTGGTGATGGAAGATTTGGTGTATTAGGCCATGGAGATCGAGAGTGTGTATCTTATCCAAAGCAGGTACAATTATTGAGTGGACACAAGGCTATTAAGGTTGCATGTGGAGTCTGGCATTCAGCAGCTATTATAGAGATCATGGATCCGTCTGGTTCAGGTGCTTCATCCAAGAAGATCTTCACATGGGGTGATGGTGACCAATATCGTCTAGGTCATGTTAACAAGGAAAATTACCTTCAGCCAACTTGTGTAGCTGCCCTTGCTGATTATAGTTTTAACCAGATTGCATGTGGGTACACTATGACTGTTGCACTCACTGTATCTGGTCATGTTTTTACAGTGGGAGGCACAGCATATGGTCAACTAGGAAATCCAAATTCTGATGGAAAAGTCCCAATTCTAGTCCGAGATAAGTTGGTAGGTGAGTTCGTGGAGGAAATAGCATGCGGAGCAAATCATGTTGCTGTATTGACTTCAAGAAGTGAACTATATACTTGGGGGAGAGGTGCCAATGGAAGACTAGGACATGGAGACACAGAGGACCAGAAAACCCCAACCTTGGTGGAAGCCTTGAAAGACAGGCATGTTAGGAATATCTCATGTGGCTCTACCTTTACATGTTGTATTAGCTTACATAAATGGGTTTCAGAAGTTGACCAATCTGTTTGCTCTGATTGTCGGCAACCATTTGGTTTTACCCGAAAAAGGCATAATTGTTATCATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAGGCTTCCAAAGCAGCATTGGCTCCAACGCCTAGCAAACCACATCGCGTGTGTGATGCTTGTTATGCTAAGCTAAAGGGTTCTGATAGTGCTTCCAATTTAGGTAAAGAACTTAGTCGTCCTGCTACTTCCGTATATGGAAGGGAAAAATTTGAGCGGGGAGAGGTAAAGTCTTCGAGAATTCTCTTGCCTCCCATCACAGAACCCATAAAATACCTTGAGATTAGGAATAGTAAGCATGGAAATATAAATGACACTTCTTCCATAGTCCGAGCAGCTCAAGTTCCTATGAGTTTGCAGTTGAAAGACGTTGCATTTCCAATTTCACTGAGTTCTGCACAGAATTTTTTCAAGCCTTTCATGCAGCCAAGTCAACCTCAACCTCAACCTCCACCTTCACCAACTCCAAGACCTATGTCGCCATATGCTAAAAAAAGACCACCAAGCCCACCGCGTTCTCCCTCCCCAGGATTTTCAAGAGGCCTTATTGATAATTTAAGGAAGAAAAATGATCATATGAATCAAGAAGTCTCAAAATTGCAAAACAAAAATAAATGTTTGAAGCAGAAGAATGACACACAAGAAATGAAGATTCATGAGCTTCAGAAAATTATTGAAGAGGAATCTTCGAAGCTTAGAGAAGCAAAGGAATTTATTAAGTCCATGACAGATAAGTTGAGGGAAGTCATTGAGACTTTGCCATCTGATATTCCTGACAATGAGACTTTGAGGACCGTGCATGCCCAAGCTGAAGAATTTATTAATGAAGAAAAACATTTTCAACCTTCTTCCTCCCCACTGAGCCTTGAGTCTGAGCCACAAAGTACACCTGATGTACCTGCCTCGTATAGTAACACTTCAAAGCTGAAAGAGCGAAGAATGGAAGGAAATGATGATGCTTCTAGGGTTGTTCCAACCACAGACGGAGAAAATATTTTTGAAGAAATCTGCAACTCGTCTACATCTAGTCCAGTAGTGACTCCACTAAACTCCAGAAAAGTTTCAAGATTAAGAGACACTAGTATACACGTGATAGAAGGAGAGAGATCAATCATTGAACAATTTGAGTCAGGTGTTTATGTCACCCTCGTTGTACTACCATGTGGTTACAAAGTTTTCAAACGAATTAGATTCAGTAAACGAAGATTCAATGAGCAGCAAGCAGAAGTATGGTGGAATCAAAACAAAGATAAGGTGTATAGTAAATACAGTCCTCCACCCATAAAAAATGCAATTACTGGATCATCTATTACCTCTCCAAAGGCTGGAGAGAATAGTGAGGCATTACCTTCTTCCTAG 3150 0.4156 MALITLKKGTQLVKYCRKGKPKFCSFRLSSDETKLIWISHGKEKTLKLASVSHILPGQRTAVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDQAEVEIWFSTLKALISTGERIRRGISNLSNDSVDFVAGTLEFASSIARSRCSFESVSHESSSSWSRSETSMPIRTSVGDGSRVSVSSSVGSGIDDIESLGDVFIWGEVWADGNSFDGLGSQATYKIDVLSPKPLESDVVLDVNQIGPGVRHIGLVTRQGEVFTWGEDSGGRLGHGLEKDFGRPHLVESLAITNVNFVACGEYHSCAVSVSGDLFTWGDGTKCAGLLGHGSDVSYWIPKRVSGLLDGHQVVSVACGAWHSALATSHGKLFTFGDGRFGVLGHGDRECVSYPKQVQLLSGHKAIKVACGVWHSAAIIEIMDPSGSGASSKKIFTWGDGDQYRLGHVNKENYLQPTCVAALADYSFNQIACGYTMTVALTVSGHVFTVGGTAYGQLGNPNSDGKVPILVRDKLVGEFVEEIACGANHVAVLTSRSELYTWGRGANGRLGHGDTEDQKTPTLVEALKDRHVRNISCGSTFTCCISLHKWVSEVDQSVCSDCRQPFGFTRKRHNCYHCGLVFCHPCSSKKASKAALAPTPSKPHRVCDACYAKLKGSDSASNLGKELSRPATSVYGREKFERGEVKSSRILLPPITEPIKYLEIRNSKHGNINDTSSIVRAAQVPMSLQLKDVAFPISLSSAQNFFKPFMQPSQPQPQPPPSPTPRPMSPYAKKRPPSPPRSPSPGFSRGLIDNLRKKNDHMNQEVSKLQNKNKCLKQKNDTQEMKIHELQKIIEEESSKLREAKEFIKSMTDKLREVIETLPSDIPDNETLRTVHAQAEEFINEEKHFQPSSSPLSLESEPQSTPDVPASYSNTSKLKERRMEGNDDASRVVPTTDGENIFEEICNSSTSSPVVTPLNSRKVSRLRDTSIHVIEGERSIIEQFESGVYVTLVVLPCGYKVFKRIRFSKRRFNEQQAEVWWNQNKDKVYSKYSPPPIKNAITGSSITSPKAGENSEALPSS* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00061 1049 SUPERFAMILY PH domain-like 5 108 - -
Lapu7g00061 1049 MobiDBLite consensus disorder prediction 1021 1049 - -
Lapu7g00061 1049 FunFam PH, RCC1 and FYVE domains-containing protein 1 165 412 - -
Lapu7g00061 1049 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 252 303 IPR000408 -
Lapu7g00061 1049 MobiDBLite consensus disorder prediction 735 779 - -
Lapu7g00061 1049 Pfam FYVE zinc finger 577 642 IPR000306 GO:0046872
Lapu7g00061 1049 SUPERFAMILY RCC1/BLIP-II 193 578 IPR009091 -
Lapu7g00061 1049 MobiDBLite consensus disorder prediction 875 922 - -
Lapu7g00061 1049 MobiDBLite consensus disorder prediction 1025 1049 - -
Lapu7g00061 1049 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 525 576 IPR000408 -
Lapu7g00061 1049 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 421 472 IPR000408 -
Lapu7g00061 1049 CDD PH_PLC_plant-like 2 109 - -
Lapu7g00061 1049 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 581 643 IPR017455 -
Lapu7g00061 1049 Pfam Transcription factor BRX N-terminal domain 824 859 IPR027988 -
Lapu7g00061 1049 Coils Coil 780 842 - -
Lapu7g00061 1049 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 42 843 - -
Lapu7g00061 1049 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 397 407 IPR000408 -
Lapu7g00061 1049 MobiDBLite consensus disorder prediction 876 904 - -
Lapu7g00061 1049 MobiDBLite consensus disorder prediction 740 772 - -
Lapu7g00061 1049 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 359 410 IPR000408 -
Lapu7g00061 1049 ProSiteProfiles BRX domain profile. 966 1021 IPR013591 -
Lapu7g00061 1049 Gene3D - 1 115 IPR011993 -
Lapu7g00061 1049 SUPERFAMILY FYVE/PHD zinc finger 577 646 IPR011011 -
Lapu7g00061 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 583 652 IPR013083 -
Lapu7g00061 1049 Pfam Regulator of chromosome condensation (RCC1) repeat 252 300 IPR000408 -
Lapu7g00061 1049 Pfam Regulator of chromosome condensation (RCC1) repeat 423 469 IPR000408 -
Lapu7g00061 1049 Pfam Regulator of chromosome condensation (RCC1) repeat 472 521 IPR000408 -
Lapu7g00061 1049 Pfam Regulator of chromosome condensation (RCC1) repeat 303 354 IPR000408 -
Lapu7g00061 1049 Pfam Regulator of chromosome condensation (RCC1) repeat 526 573 IPR000408 -
Lapu7g00061 1049 Pfam Regulator of chromosome condensation (RCC1) repeat 359 407 IPR000408 -
Lapu7g00061 1049 SMART fyve_4 573 644 IPR000306 GO:0046872
Lapu7g00061 1049 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 304 358 IPR000408 -
Lapu7g00061 1049 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 473 524 IPR000408 -
Lapu7g00061 1049 Gene3D - 416 582 IPR009091 -
Lapu7g00061 1049 Gene3D - 151 415 IPR009091 -
Lapu7g00061 1049 PRINTS Chromosome condensation regulator RCC1 signature 254 270 IPR000408 -
Lapu7g00061 1049 PRINTS Chromosome condensation regulator RCC1 signature 520 541 IPR000408 -
Lapu7g00061 1049 PRINTS Chromosome condensation regulator RCC1 signature 304 320 IPR000408 -
Lapu7g00061 1049 PRINTS Chromosome condensation regulator RCC1 signature 361 375 IPR000408 -
Lapu7g00061 1049 PRINTS Chromosome condensation regulator RCC1 signature 462 480 IPR000408 -
Lapu7g00061 1049 PRINTS Chromosome condensation regulator RCC1 signature 345 361 IPR000408 -
Lapu7g00061 1049 Pfam Transcription factor regulating root and shoot growth via Pin3 966 1020 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00061 Lapu-Chr7 659378 665862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00061 963 1021 Major Intrinsic Protein MIP AT1G31880 40.678 4.19e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00061 - - gmx:100812689 1616.28