LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu7g00032	ATGAATCGTGTTGATGATGGTCCTGTGATTGTGAAGGAGGAGTTTCGTGGAGAAGGCGTGGTTGCTCCACAACCGCTTGAGGGGCTTCATGAAAGTGGTCCTCCACCATTCCTCACAAAGACTTACGACATCGTTGATGATGTTTCCACTGATGAGATAGTTTCATGGAGCAGAGGAAACAACAGCTTTGTTGTGTGGGATCCTCAAGCTTTTTCCATCACTCTTCTCCCCAAATACTTCAAACACAACAACTTCTCCAGCTTTGTCAGACAGCTCAACACCTATGGGTTTAGAAAGGTAGATCCTGATAAATGGGAGTTTGCTAATGAAGGGTTTCTTAGAGGACAAAGGCATCTATTGAAGATCATAAGGAGGAGGAAGACCACTCATCAACCTCAGCCACCACAACAATCTCTGGATCATTGTGTAGAAGTGGGGAGGTTTGGATTAAATGGAGAAATTGATGGGTTGAGACGTGACAAGCAAGTTTTGATGGTGGAGTTGGTGAAGCTTAGACAACAACAGCAGAACACAAAAAACCACCTTCAATCAATGGAAAGTAGGCTCAAAAAGAATGAGCAGAAACAGCAACAGATGATGAAGTTCTTGGCAAGGGCAATGCAAAACCCCAATCTCTTGCAACAATTGGTTCAACAAAGGGAGTGGAGGAAGGAGCTGGAGGAAGCTCTTTCCAACAAGAGAAGACATATTGATCAAGGGCCTAGTGATGCTGAAGAATGCTCAGGATTGGTTAAACTTGAACAGGAGGAGTACAATGAGATATCAGAGCTTGAGGCTTCTGACATGGAGCTTGTTATGAACATGGGGGAACAAAGTGGGAGCCAAAAGAACACTTTTGATGAAGGGGGGAAAGGAGGTGAACTTGAGAGTAGAAATGAAGGCACTGAGGAAGTACTGTGGGAGGAACTTTTGAATGAGGGTGTTGAAGAAGATCTACTAGCATTGGAAAATGATTATGTATAA	984	0.437	MNRVDDGPVIVKEEFRGEGVVAPQPLEGLHESGPPPFLTKTYDIVDDVSTDEIVSWSRGNNSFVVWDPQAFSITLLPKYFKHNNFSSFVRQLNTYGFRKVDPDKWEFANEGFLRGQRHLLKIIRRRKTTHQPQPPQQSLDHCVEVGRFGLNGEIDGLRRDKQVLMVELVKLRQQQQNTKNHLQSMESRLKKNEQKQQQMMKFLARAMQNPNLLQQLVQQREWRKELEEALSNKRRHIDQGPSDAEECSGLVKLEQEEYNEISELEASDMELVMNMGEQSGSQKNTFDEGGKGGELESRNEGTEEVLWEELLNEGVEEDLLALENDYV*	328

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lapu7g00032	327	ProSitePatterns	HSF-type DNA-binding domain signature.	76	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu7g00032	327	Gene3D	-	29	128	IPR036388	-
	Lapu7g00032	327	FunFam	Heat shock transcription factor 1	30	127	-	-
	Lapu7g00032	327	Pfam	HSF-type DNA-binding	37	126	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu7g00032	327	SMART	hsfneu3	33	126	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu7g00032	327	MobiDBLite	consensus disorder prediction	278	302	-	-
	Lapu7g00032	327	SUPERFAMILY	"Winged helix" DNA-binding domain	32	126	IPR036390	-
	Lapu7g00032	327	Coils	Coil	154	195	-	-
	Lapu7g00032	327	Coils	Coil	219	239	-	-
	Lapu7g00032	327	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	23	261	IPR027725	-
	Lapu7g00032	327	PRINTS	Heat shock factor (HSF) domain signature	37	60	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu7g00032	327	PRINTS	Heat shock factor (HSF) domain signature	88	100	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lapu7g00032	327	PRINTS	Heat shock factor (HSF) domain signature	75	87	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu7g00032	Lapu-Chr7	362540	364339	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu7g00032	23	319	HSF	AT3G22830	57.015	1.65e-121	353

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lapu7g00032		HSF_DNA-bind	4.2e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu7g00032	K09419		-	gmx:100806789	430.639