Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu7g00011 ATGGAAAAGGGTGTGGTGTTTGAGAGTGATCTGAACCTCAAGGCAACAGAACTTAGGTTGGGGCTGCCAGGGACAGAGGAAAAGGAAGACAAAACTCCTCATGCATATGCTGTTCTTAGAAACAACAAAAGGCAAGTGCGTGAAACTTCTCAAGACTCTGTTTCCATTTCCAAGGCCTCACATCACCAACAACATGTGGACACTGTTTCAGCCCCTCCACCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAGAACAGTGTGCAGGAGGGTGAGGGGGATGGGATCTATGTGAAAGTGAGCATGGATGGAGCACCTTACCTCAGAAAGATTGACTTGAAAGTCTACAGTGGCTATCCAGAACTACTCAAAGCTTTAGAATCCATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAGAGAGGGTTATAAGGGGTCTGAATATGCTCCTACATATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGCTCGGAAGCAAAAGGGCTGGGTTGTGGTGTATGA 591 0.4636 MEKGVVFESDLNLKATELRLGLPGTEEKEDKTPHAYAVLRNNKRQVRETSQDSVSISKASHHQQHVDTVSAPPPKAKIVGWPPIRSYRKNSVQEGEGDGIYVKVSMDGAPYLRKIDLKVYSGYPELLKALESMFKLTIGEYSEREGYKGSEYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEAKGLGCGV* 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu7g00011 196 Gene3D - 94 196 - -
Lapu7g00011 196 MobiDBLite consensus disorder prediction 43 73 - -
Lapu7g00011 196 SUPERFAMILY CAD & PB1 domains 89 185 - -
Lapu7g00011 196 Pfam AUX/IAA family 16 193 IPR033389 -
Lapu7g00011 196 MobiDBLite consensus disorder prediction 48 67 - -
Lapu7g00011 196 ProSiteProfiles PB1 domain profile. 99 186 IPR000270 GO:0005515
Lapu7g00011 196 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 190 IPR003311 GO:0005634|GO:0006355
Lapu7g00011 196 FunFam Auxin-responsive protein 94 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu7g00011 Lapu-Chr7 189974 192217 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu7g00011 102 192 B3 DNA Binding Superfamily AT2G46530 38.462 4.46e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lapu7g00011 AUX_IAA 8.1e-54 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu7g00011 K14484 - gmx:100800212 325.094
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu7g00011 7 189974 192217 Lapu7g00011 7 189974 192217 ECH