Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03069 ATGGACAATAACGAGGAAATCCCCTCAACACCTGCAACACCAGGCACTCCTGGTGCACCCCTTTTTGGAGGTTTCAACAATGGCAGGAACAAGACTAATGGTAACAAGAAGTCCCTTCTCAAGAGTTGCAGGTGCTTCAGTGTGGAGGATTGGAGCATAGAAGATGGAGCCTTTCCTGCCGTCTCTTGCTCATTGTCACCCCCTCCTCCAGCCCCTCTTGCAAGAAAGGTTGGTGCTGAGTTCATAGGGACCTTCATTCTCATGTTCGCCTCCACTGCCGCCGCCATTGTCAACCAAAAGACAAACGGCTCTGAGACTCTCATGGGGTGTGCTGCCACCACTGGTCTCGCCGTTATGATCGTCATCCTCGCCACCGGTCACATCTCCGGTGCTCATCTCAACCCTGCTGTCACTCTTTCCTTTGCTGCATTGAAACATTTTCCCTGGAAGCATGTGCCTACGTACATTGGTGCACAAGTTTTAGCATCTATCTGTGCTGGATTTTCTCTGAAAGGAGTTTATCATCCTTTCATGAGTGGTGGAGTCACCGTTCCTTCTGGAGGATATGGCCAAGCTTTTGCTTTAGAGTTCATTATTGGTTTCAATCTCATGTTTGTTGTCACCGCAGTCGCCACCGACACCAGAGCTGTGGGAGAACTGGCGGGAATCGCGGTAGGAGCCACTGTAATGCTCAACATACTCATAGCAGGGCCAGTATCAGGGGGCTCAATGAACCCAGTAAGAACACTAGGTCCTGCTATCGCCGCTAACAACTACAAAGCCATATGGGTTTATCTGTTAGCTCCCGTACTTGGAGCTTTAGCTGGGGCAGGTACCTACACTGCAGTGAAGCTGCCCCAAGAAGACGATGACGCCAAAGCAAAGGCTTCAATCAGCTTCAGAAGCTGA 909 0.505 MDNNEEIPSTPATPGTPGAPLFGGFNNGRNKTNGNKKSLLKSCRCFSVEDWSIEDGAFPAVSCSLSPPPPAPLARKVGAEFIGTFILMFASTAAAIVNQKTNGSETLMGCAATTGLAVMIVILATGHISGAHLNPAVTLSFAALKHFPWKHVPTYIGAQVLASICAGFSLKGVYHPFMSGGVTVPSGGYGQAFALEFIIGFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPVSGGSMNPVRTLGPAIAANNYKAIWVYLLAPVLGALAGAGTYTAVKLPQEDDDAKAKASISFRS* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03069 302 Gene3D Glycerol uptake facilitator protein. 63 295 IPR023271 -
Lapu6g03069 302 Pfam Major intrinsic protein 74 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g03069 302 MobiDBLite consensus disorder prediction 1 27 - -
Lapu6g03069 302 SUPERFAMILY Aquaporin-like 72 289 IPR023271 -
Lapu6g03069 302 ProSitePatterns MIP family signature. 132 140 IPR022357 -
Lapu6g03069 302 CDD MIP 75 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g03069 302 PRINTS Major intrinsic protein family signature 114 138 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g03069 302 PRINTS Major intrinsic protein family signature 151 170 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g03069 302 PRINTS Major intrinsic protein family signature 195 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g03069 302 PRINTS Major intrinsic protein family signature 226 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g03069 302 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g03069 302 PRINTS Major intrinsic protein family signature 75 94 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lapu6g03069 302 PANTHER AQUAPORIN NIP2-1 38 288 IPR034294 -
Lapu6g03069 302 FunFam Aquaporin NIP2-1 64 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03069 Lapu-Chr6 41818129 41820564 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03069 3 301 Major Intrinsic Protein MIP AT1G80760 74.510 7.68e-161 448
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03069 K09874 - gmx:100815637 499.204