Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03051 ATGGGGTTGTCAAGTCTCCCAGAACCATCTGAAGGAATGCTGTGTGTGCTTCTTGTAAACACTGCTATGTCTATATCCCTATTCAAGGGCATTGTTAGGACAATTCTTCAGATTGTTGGTATCCGTCATGCATCATCTCCTTCACAAGACATCTCCCAAACTCCTCCTGATCCATTTGAGGTCCACCTCAACCCCTCAGAGGGTCTCATTGAAGAGTTCAGAAGCAGGATACCAACCCTTACGTTTGACTCCTTGTGTGGCTGCAAACAACCTCAACATGAATGTTGTGTGTGTCTCACAAGGTTTGAGCCAGAATCAGAGGTAAATTGTTTACCCTGTGGCCATCTTTTCCATAAGCTGTGCTTGGAGAAGTGGTTGGACTATTGGAACATTACATGCCCTCTTTGCAGGACTTCCTTGATGCCTGAAGATGACACATCTTGCTTTTGGTAA 453 0.4503 MGLSSLPEPSEGMLCVLLVNTAMSISLFKGIVRTILQIVGIRHASSPSQDISQTPPDPFEVHLNPSEGLIEEFRSRIPTLTFDSLCGCKQPQHECCVCLTRFEPESEVNCLPCGHLFHKLCLEKWLDYWNITCPLCRTSLMPEDDTSCFW* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03051 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 143 IPR013083 -
Lapu6g03051 150 SMART ring_2 95 136 IPR001841 -
Lapu6g03051 150 SUPERFAMILY RING/U-box 94 143 - -
Lapu6g03051 150 ProSiteProfiles Zinc finger RING-type profile. 95 137 IPR001841 -
Lapu6g03051 150 PANTHER - 1 148 IPR044249 -
Lapu6g03051 150 Pfam Ring finger domain 94 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03051 Lapu-Chr6 41496939 41498642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03051 1 144 C3H Transcription Factor Family AT2G04240 59.740 4.04e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03051 K16285 - gmx:100306440 265.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g03051 6 41496939 41498642 Lapu6g03051 6 41496939 41498642 ECH