Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03050 ATGGGTTATATATGTGATTTTTGTGGAGACCAGAGATCCATGGTGTACTGCCGCTCTGATGCCGCATGCTTATGTTTGTCTTGTGATCGGAATGTTCATTCTGCTAATGCCCTTTCCAGGCGTCATTCACGCACCCTTTTGTGTGAGAGATGCAATTCACAACCTGCCTTTGTGAGGTGTGTTGAAGAGAAAATTTCACTCTGTCAGAATTGTGATTGGTTGGGTCATGGAGTCTCTGCATCTTCCACACATAAGAGACAAGCTATCAGTTGCTACTCTGGCTGCCCTTCGGCCGCTGAACTGTCTACAATATGGTCATTTGTGTTGGATATGGCTTCCATTAGGGAGTCTACATGTGAGCAAGAACTGGGCTTAATGAGTATTAATGAGAACAACAACAAGAGTGTTGGGGTTCCTCCTGAAAAACGGAGCGTGTCTGGTTCAGATCATGTTACTGATCTACCTGCTTTGGAGAAGTCTTTGGTTGGTACATCTTTGCTGCCTGAGTCAAGCTCCGAACCTCGTATTCTGGACCAGCCGGCTGGACCTGCCAATGAATGTCTGCCAAAGTTGTACTGTCCTGCTACAAAATGCCCTGCTTTATGTGAAGATGATAATCTATATGATGATTTTGACATGGATGAAGTGGATCTAAATCTCGAGAACTATGAAGAACTTTTTGGTGTGGCCCTCAGTCATTCTGAAGAGCTATTTGAAAATGGTGGAATTGATAGCTTGTTTGGGACAAAGGACATGTCTGCCGGAGATTCCAATTGTCAGGATGCCATTGCTGCTGAGGGGTCATCGGTTGGACTGGTCAATGCAACACAGCCTGCTTGCAGCAACGGAGCATCTGCAGATTCCATTTTGAGTACTAAAACCGAACCGATTCTTTGTTTTACCGGGAGGCAAGCACATTCAAACCTCTCTTTTTCAGGCATTACCGGAGAGAGTGGTGCTGCAGACTATCAAGACTGTGGGGCTTCTTCCATGCTTCTCATGGGAGAACCTCCTTGGCTTGCTCCTTGTCCTGAGAATTCCCTACAATCTGCCAACCGCAGCAATGCTGTCTTGCGTTACAAAGAAAAGAAGAAGGCGCGAAAGTTCGAAAAACAAGTGCGGTATGCGTCTCGCAAGGCAAGGGCAGACGTCAGAAGGCGAGTGAAGGGCCGGTTTGTGAAAGCCGGCGACAGGAGGGTGGTGTTGATGTTCTTCAAGGAGGAAAAAGGCTTTGTGTTCTCCAACAGTGTAAGCTCTGGATGTTCCAACTTGTGA 1275 0.4675 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSRRHSRTLLCERCNSQPAFVRCVEEKISLCQNCDWLGHGVSASSTHKRQAISCYSGCPSAAELSTIWSFVLDMASIRESTCEQELGLMSINENNNKSVGVPPEKRSVSGSDHVTDLPALEKSLVGTSLLPESSSEPRILDQPAGPANECLPKLYCPATKCPALCEDDNLYDDFDMDEVDLNLENYEELFGVALSHSEELFENGGIDSLFGTKDMSAGDSNCQDAIAAEGSSVGLVNATQPACSNGASADSILSTKTEPILCFTGRQAHSNLSFSGITGESGAADYQDCGASSMLLMGEPPWLAPCPENSLQSANRSNAVLRYKEKKKARKFEKQVRYASRKARADVRRRVKGRFVKAGDRRVVLMFFKEEKGFVFSNSVSSGCSNL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03050 424 CDD Bbox1_BBX-like 47 89 - -
Lapu6g03050 424 SMART bboxneu5 48 89 IPR000315 GO:0008270
Lapu6g03050 424 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lapu6g03050 424 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lapu6g03050 424 ProSiteProfiles CCT domain profile. 353 395 IPR010402 GO:0005515
Lapu6g03050 424 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 397 - -
Lapu6g03050 424 Pfam CCT motif 353 395 IPR010402 GO:0005515
Lapu6g03050 424 CDD Bbox1_BBX-like 4 47 - -
Lapu6g03050 424 ProSiteProfiles Zinc finger B-box type profile. 43 89 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03050 Lapu-Chr6 41466501 41472962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03050 1 397 C2C2-CO-like Transcription Factor Family AT3G07650 55.718 8.99e-148 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lapu6g03050 CCT 2e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03050 - - pvu:PHAVU_006G005200g 718.768