Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu6g03049 | ATGGCTTCCAGAAAATCCGACAACCCTCACTCCGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGACACCACCCTAGAGACGTTTGTGAAGTACTTTGAGAAGTACGGCGAGATTACGGACTCCGTTATCATGAAGGACCGTCAAACGGGTCGCCCCAGGGGATTCGGGTTCATCACCTACGCGGATCCCTCCGTCGTTGACCAGGTCATTCAGGAGAACCACATCATCAACGGCAAACAGGTTGAGATCAAGAGGACCATTCCCAAGGGTTCCTCGCAGGCTAATGACTTCAAAACCAAGAAGATCTTCGTCGGCGGTATTCCGACATCAGTATCCGAAGATGAGTTCAAGAACTTCTTCTCCAAGTATGGGAAGGTGGTGGAGCATGAGATTATACGGGACCACACCACAAAGCGATCACGGGGTTTTGGCTTTATAGTTTTTGACAGTGAGAAGGTCGTGGATAATATTTTGGCAGATGGAAACATGATTGATATGGCCGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTGCTCCGTTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGATTCAGTGGATTTGGTGATTCTTATGGAAGTTTTGGTGGTAGCGGGTATGGTCCTGGTTCTTATAGGTCACTTGGTGGAGGGTTTGGGGGTAGGCTTGGCGATTATGGTGGATATGGGGCTGGAGATGACTTTGGTGGTAGTTTTGGAGGTTATGGCGGTGGTGGTGCTGGTGGCTATGCTGGATTTCGAGGAGAATCATCATTTGGCTACTCTAGTCGCTACGGATCATACATGGGTGGCCTTGGTGCTGGTTATGGCGGCAGTGGATTAGGTGCGTATGGGCGAGGTGCTGGGGGCTATGGAAGCTATGGTGGTCCAGGTGCTGGTGGGGGTTATGAATCAGGCCCAGGTGCTGGTTATGGTGGAGCTGGTGGTGGAGTATATCCCAGTAGGGGAAGCTATGGTGGCAGTAGTCGTTACCATCCTTACACAAGATAG | 1062 | 0.5075 | MASRKSDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDQVIQENHIINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDEFKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNPASLAPFASDSRARSYNDGFSGFGDSYGSFGGSGYGPGSYRSLGGGFGGRLGDYGGYGAGDDFGGSFGGYGGGGAGGYAGFRGESSFGYSSRYGSYMGGLGAGYGGSGLGAYGRGAGGYGSYGGPGAGGGYESGPGAGYGGAGGGVYPSRGSYGGSSRYHPYTR* | 354 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu6g03049 | 353 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 7 | 353 | - | - | |
Lapu6g03049 | 353 | SMART | rrm1_1 | 107 | 180 | IPR000504 | GO:0003723 | |
Lapu6g03049 | 353 | SMART | rrm1_1 | 19 | 90 | IPR000504 | GO:0003723 | |
Lapu6g03049 | 353 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 106 | 184 | IPR000504 | GO:0003723 | |
Lapu6g03049 | 353 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 99 | 224 | - | - | |
Lapu6g03049 | 353 | SUPERFAMILY | RNA-binding domain, RBD | 9 | 98 | IPR035979 | GO:0003676 | |
Lapu6g03049 | 353 | Gene3D | - | 18 | 96 | IPR012677 | - | |
Lapu6g03049 | 353 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 17 | 98 | - | - | |
Lapu6g03049 | 353 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 20 | 86 | IPR000504 | GO:0003723 | |
Lapu6g03049 | 353 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 108 | 168 | IPR000504 | GO:0003723 | |
Lapu6g03049 | 353 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 18 | 94 | IPR000504 | GO:0003723 | |
Lapu6g03049 | 353 | SUPERFAMILY | RNA-binding domain, RBD | 102 | 204 | IPR035979 | GO:0003676 | |
Lapu6g03049 | 353 | Gene3D | - | 97 | 218 | IPR012677 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu6g03049 | Lapu-Chr6 | 41445718 | 41450185 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu6g03049 | 4 | 177 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 27.083 | 1.02e-12 | 67.4 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu6g03049 | K12741 | - | gmx:100801373 | 401.749 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu6g03049 | 6 | 41445718 | 41450185 | Lapu6g03049 | 6 | 41445718 | 41450185 | ECH |