Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03049 ATGGCTTCCAGAAAATCCGACAACCCTCACTCCGGCGACGGCGCCAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGACACCACCCTAGAGACGTTTGTGAAGTACTTTGAGAAGTACGGCGAGATTACGGACTCCGTTATCATGAAGGACCGTCAAACGGGTCGCCCCAGGGGATTCGGGTTCATCACCTACGCGGATCCCTCCGTCGTTGACCAGGTCATTCAGGAGAACCACATCATCAACGGCAAACAGGTTGAGATCAAGAGGACCATTCCCAAGGGTTCCTCGCAGGCTAATGACTTCAAAACCAAGAAGATCTTCGTCGGCGGTATTCCGACATCAGTATCCGAAGATGAGTTCAAGAACTTCTTCTCCAAGTATGGGAAGGTGGTGGAGCATGAGATTATACGGGACCACACCACAAAGCGATCACGGGGTTTTGGCTTTATAGTTTTTGACAGTGAGAAGGTCGTGGATAATATTTTGGCAGATGGAAACATGATTGATATGGCCGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCCTCAAACCCAGCTTCTCTTGCTCCGTTTGCTAGTGACTCTAGGGCACGTTCTTACAATGATGGATTCAGTGGATTTGGTGATTCTTATGGAAGTTTTGGTGGTAGCGGGTATGGTCCTGGTTCTTATAGGTCACTTGGTGGAGGGTTTGGGGGTAGGCTTGGCGATTATGGTGGATATGGGGCTGGAGATGACTTTGGTGGTAGTTTTGGAGGTTATGGCGGTGGTGGTGCTGGTGGCTATGCTGGATTTCGAGGAGAATCATCATTTGGCTACTCTAGTCGCTACGGATCATACATGGGTGGCCTTGGTGCTGGTTATGGCGGCAGTGGATTAGGTGCGTATGGGCGAGGTGCTGGGGGCTATGGAAGCTATGGTGGTCCAGGTGCTGGTGGGGGTTATGAATCAGGCCCAGGTGCTGGTTATGGTGGAGCTGGTGGTGGAGTATATCCCAGTAGGGGAAGCTATGGTGGCAGTAGTCGTTACCATCCTTACACAAGATAG 1062 0.5075 MASRKSDNPHSGDGASPGKIFIGGLAKDTTLETFVKYFEKYGEITDSVIMKDRQTGRPRGFGFITYADPSVVDQVIQENHIINGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTSVSEDEFKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDSEKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNPASLAPFASDSRARSYNDGFSGFGDSYGSFGGSGYGPGSYRSLGGGFGGRLGDYGGYGAGDDFGGSFGGYGGGGAGGYAGFRGESSFGYSSRYGSYMGGLGAGYGGSGLGAYGRGAGGYGSYGGPGAGGGYESGPGAGYGGAGGGVYPSRGSYGGSSRYHPYTR* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03049 353 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 7 353 - -
Lapu6g03049 353 SMART rrm1_1 107 180 IPR000504 GO:0003723
Lapu6g03049 353 SMART rrm1_1 19 90 IPR000504 GO:0003723
Lapu6g03049 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Lapu6g03049 353 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Lapu6g03049 353 SUPERFAMILY RNA-binding domain, RBD 9 98 IPR035979 GO:0003676
Lapu6g03049 353 Gene3D - 18 96 IPR012677 -
Lapu6g03049 353 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Lapu6g03049 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Lapu6g03049 353 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Lapu6g03049 353 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Lapu6g03049 353 SUPERFAMILY RNA-binding domain, RBD 102 204 IPR035979 GO:0003676
Lapu6g03049 353 Gene3D - 97 218 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03049 Lapu-Chr6 41445718 41450185 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03049 4 177 Eukaryotic Initiation Factors Gene Family AT1G71770 27.083 1.02e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03049 K12741 - gmx:100801373 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g03049 6 41445718 41450185 Lapu6g03049 6 41445718 41450185 ECH