Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03046 ATGGCCGAAGCTTCAACAATTACCTTCTTCTGCACTCTCCTTCCCTCTTTCCGCCTTCATAAGCATGTGTCTCACCGTCCCCTGAGCCTCCCACGCAGACCCCAGGTTCGCTGCTCGGTCTCCGCCGGTTCTACTCCCCAGAATGCGGTGGCTTGGGGATGCGAGATTGAGTCGCTGGAGAGTGCGTCGGCGCTGCAGAGGTGGCTGTCGGAGTCGGGGCTTCCGCCGCAGAAGATGGGGATAGATAGGGTGGAGGTGGGAGAGAGAGGACTTGTGGCTTTGAAGAACATAAGGAAAGGGGAGAAGCTGCTCTTTGTGCCTCCCTCTCTTGTCATTACTCCCAATTCGGAGTGGAGTCGACCTGAAACTGGTGAAGTGTTGAAAAGAAATTCAGTGCCAGATTGGCCTTTGCTTGCAACTTACCTCATAAGTGAAGCTAGCCTCATGGAATCTTCAAGATGGAGCAATTATATATCAGCCTTACCTCGTCAACCTTACTCGCTTCTTTACTGGTCGCAAGCAGAACTAGATCGCTACTTGGAAGCTTCGCAGATTAGGGAGAGAGCAATTGAAAGGATCAATAATGTTATTGGAACATACAATGATTTGAAGCTCAGAATATTTTCCAAATACCCTGATTTATTCCCTGATGAGGTGTTCAACATTGAGTCCTTCAAATGGTCATTCGGTATTCTTTTCTCCCGCTTGGTTCGGTTACCCTCAATGGATGGACAGGTTGCCTTGGTTCCTTGGGCTGATATGCTAAATCATAGTTGTGAGGTGGAGACATTTTTGGATTATGACAAGCAATCAAAGGGAATTGTCTTCTCAACAGATCGACCCTATCAACCAGGTGAGCAGGTGTTTATTTCGTATGGAAAAAAATCAAATGGGGAGCTTTTGCTATCTTATGGGTTTGTTCCGAAGGAAGGTGCTAATCCCAATGATTCAGTTGAGTTGTCATTGTCACTAAAGAAATCCGATGCATCCTACCAGGAGAAGTTAGAACTCTTGAGGAAATATGGATTATCAGTATCTCAGTGTTTTCCTATACAGATAACTGGTTGGCCATTGGAATTAATGGCTTATGCTTATTTAGCTGTCAGTCCTTCAAGCATGAAAGAAAATTTTGAAGAGATGGTTGCTGCAGCTTCGAATAATACCACCTCCAAGAAGGATTTGAGATATCCTGAAATAGAGGAGCAAGCATTGCAATTCATACTAGACAGCTGTGAAGCAAGCATATCAAAATACAACAAGTTCTTGCAGGCAAGTGGATCACTGGATTTGGATGTGACTTCTCCTAAACAACTCAACAGAAGGCTCTTTCTGAAACAGCTAGCTGTGGACTTGTGTAGTAGCGAGCGAAGGATATTATTTCGTGCTCAATACATACTGAGAAGAAAACTGAGAGACATGAGGGCTGGTGAATTAAGAGCCCTAAAAATATTCAACGGTTTCCGGAAATTTTTCCAGTGA 1479 0.4476 MAEASTITFFCTLLPSFRLHKHVSHRPLSLPRRPQVRCSVSAGSTPQNAVAWGCEIESLESASALQRWLSESGLPPQKMGIDRVEVGERGLVALKNIRKGEKLLFVPPSLVITPNSEWSRPETGEVLKRNSVPDWPLLATYLISEASLMESSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLKLRIFSKYPDLFPDEVFNIESFKWSFGILFSRLVRLPSMDGQVALVPWADMLNHSCEVETFLDYDKQSKGIVFSTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGANPNDSVELSLSLKKSDASYQEKLELLRKYGLSVSQCFPIQITGWPLELMAYAYLAVSPSSMKENFEEMVAAASNNTTSKKDLRYPEIEEQALQFILDSCEASISKYNKFLQASGSLDLDVTSPKQLNRRLFLKQLAVDLCSSERRILFRAQYILRRKLRDMRAGELRALKIFNGFRKFFQ* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03046 492 PIRSF RMT_SET 2 489 IPR011192 GO:0009507|GO:0030785
Lapu6g03046 492 SUPERFAMILY SET domain 61 310 IPR046341 -
Lapu6g03046 492 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 46 306 - -
Lapu6g03046 492 Pfam Rubisco LSMT substrate-binding 326 459 IPR015353 -
Lapu6g03046 492 Pfam SET domain 89 293 IPR001214 GO:0005515
Lapu6g03046 492 ProSiteProfiles SET domain profile. 77 293 IPR001214 GO:0005515
Lapu6g03046 492 Gene3D - 312 479 IPR036464 -
Lapu6g03046 492 Coils Coil 491 492 - -
Lapu6g03046 492 CDD SET_RBCMT 72 307 IPR044431 GO:0016279|GO:0018022
Lapu6g03046 492 FunFam Rubisco methyltransferase family protein 312 475 - -
Lapu6g03046 492 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 60 429 - -
Lapu6g03046 492 SMART set_7 77 299 IPR001214 GO:0005515
Lapu6g03046 492 Gene3D set domain protein methyltransferase, domain 1 35 306 - -
Lapu6g03046 492 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 323 489 IPR036464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03046 Lapu-Chr6 41391964 41399668 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03046 64 262 NAC Transcription Factor Family AT3G56570 23.529 7.78e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lapu6g03046 SET 2.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03046 - - gmx:100803319 877.856
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g03046 6 41391964 41399668 Lapu6g03046 6 41391964 41399668 ECH