Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03027 ATGGACAAGGCAGATGCTGAACTTCAACGTGAGGCAGCAGATCCTGCTGTTCTTCTTCACCATCATCAGTGTTGTGCTGGAAATGGGATAGGTGACAGTACCTCCTTGATTCCAGAGTCCAGAAGACCAAACCTCTCCTCTCTGCAAATACCAGCAAGGTCAGTTGAAAATGCATTATCCTCTTTTACAAAGACAGATGGTTCTACATTGATATCAAGTCCAGGTTCCAGTAGAGGACTCCCCCCAAGGCCAAATTCAGCCAGAGTCAGGTCCACAATGAAAAGTTTGCTCTCTGAGAGGAGCTTTAGGGCTAAGAATGGTTCACAAGATAGTGAAAGGACAGTTCTAATTGTTCCTGATAACTTACCATCGGATTGTCCTGTAGATAAGCCTTCAACTTCCAAGCCTTCAACTTCTAAGCCTTCAACTTCAAGGTCCCTTTCTCTTAACAAGATTTTGTTCCCTTCATCAACCAAAGCCACACATTCATTGCCAGTTACCCCAACTGCAAATTCAGGTGCAGAGATTGTACAAGGAAGACATCCAGGGTGTGATTCTGATTTAAGTAAAATGGAAGTAAATCAGCACATTACTCGATCGGTTTCGGTTCCAGTTAATATCAAAGCCGCTAATTTAAGACGTACAGATTCTAGAAGGTTGGTTCGTGTGATTTCAGCAAGATCACTTCTAACAACTAGTGAAGGCATCTCAACTCAGAATGCTTCCGGATCAGAGATTGTTGTTGAAGATACTTCCGAGGATATTCCAGAGGAAGATGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGCAGAAGGAGGTAATACTCTTAGGATGGAATGCAGTTGTAAAGGTGAGCTTGCACTTGCTCACCAGGACTGCGCAGTAAAGTGGTTTAGTATCAAAGGAAACAAAACCTGTGATGTCTGCAAGCAGGAAGTCCTTAATCTACCAGTAACACTCTTGAAAATTTCTAGTCCTCAAACTGTTACTCAGCAGCCACTGAATGCACTGGCACCACAGCATAGAGAAGTAACTCCTTACAGGATATGGCAGGATTTATCAGTACTTATCTTGGTCAGCATGCTTGCATACTTTTGTTTTCTTGAGGAATTACTGGTTTCAGATTTGGGCACTCATGCTCTTGCTATTTCATTGCCTTTCTCCTGTGTTTTAGGACTCCTTTCATCTATGATAGCTTCAACCATGGTGAGCGGGAGTTACATGTGGGCCTATGCTTGCTTCCAGTTTGCAATTGTCATCCTGTTTGCTCATGTGTTTTATACCATACTTAATGTTAATGCCATTCTCTCAGTTCTTCTCTCCTCATTCACTGGATTTGGGATTTCAATCAGCTTGAATACTTTGGTAACGGAATATGTTAGATGGAGAATGAGAAGACTGATTCAATCTTCTACGACACAACAACTGCGTCGTGATCATGCACACCAGCAGCAAGAACATCAAAGACTGCATCCTCAACTTCAAAGGCCTCAGCAAGAGCAGCACCAATGA 1512 0.4272 MDKADAELQREAADPAVLLHHHQCCAGNGIGDSTSLIPESRRPNLSSLQIPARSVENALSSFTKTDGSTLISSPGSSRGLPPRPNSARVRSTMKSLLSERSFRAKNGSQDSERTVLIVPDNLPSDCPVDKPSTSKPSTSKPSTSRSLSLNKILFPSSTKATHSLPVTPTANSGAEIVQGRHPGCDSDLSKMEVNQHITRSVSVPVNIKAANLRRTDSRRLVRVISARSLLTTSEGISTQNASGSEIVVEDTSEDIPEEDAVCRICLVELAEGGNTLRMECSCKGELALAHQDCAVKWFSIKGNKTCDVCKQEVLNLPVTLLKISSPQTVTQQPLNALAPQHREVTPYRIWQDLSVLILVSMLAYFCFLEELLVSDLGTHALAISLPFSCVLGLLSSMIASTMVSGSYMWAYACFQFAIVILFAHVFYTILNVNAILSVLLSSFTGFGISISLNTLVTEYVRWRMRRLIQSSTTQQLRRDHAHQQQEHQRLHPQLQRPQQEQHQ* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03027 503 MobiDBLite consensus disorder prediction 101 115 - -
Lapu6g03027 503 MobiDBLite consensus disorder prediction 101 146 - -
Lapu6g03027 503 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Lapu6g03027 503 CDD RING_CH-C4HC3_MARCH 262 310 - -
Lapu6g03027 503 MobiDBLite consensus disorder prediction 478 503 - -
Lapu6g03027 503 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 247 317 IPR013083 -
Lapu6g03027 503 MobiDBLite consensus disorder prediction 65 80 - -
Lapu6g03027 503 SMART ringv_2 261 310 IPR011016 GO:0008270
Lapu6g03027 503 SUPERFAMILY RING/U-box 258 313 - -
Lapu6g03027 503 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Lapu6g03027 503 MobiDBLite consensus disorder prediction 127 146 - -
Lapu6g03027 503 PANTHER OS02G0165000 PROTEIN 37 480 - -
Lapu6g03027 503 MobiDBLite consensus disorder prediction 65 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03027 Lapu-Chr6 40708595 40717759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03027 256 368 C3H Transcription Factor Family AT2G37950 32.258 4.97e-13 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03027 - - pvu:PHAVU_006G002500g 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g03027 6 40708595 40717759 Lapu6g03027 6 40708595 40717759 PCT