Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03014 ATGGACACATGTCCCACTGCAAGGGTGCGCAGGTGGTGGTTGGAGCCCTGCTCCACCGCGAGGACGGCGACGATGGTTTCTTTGGAGGGAGGTGCGGTGAGGGCGTGTGTGGTGGCTCGGAGTACGTGTATCCGGACGGAGGACACGTGGCGCTTCGGGGATAGCACCGCGTACAGAAAAGGTCACACTGTCAGAGAAAGCTTGAAGCGCAAGATACAGGAAGAGGTGAAGGATTCTCACTGCAAGCGACTTCGCCCAACTTTCACTTCCTTCATCCTCCAAAACCTCTCACTCCTCAGCTCCTTCAATCACGCTGTTACCAGAACTGCCATCACCGTTCTTGTCAGACTCTGCAAAATCACAAAACATGAAATCCATGAGGATTTTATGTATACTATAGTAAAGAACGGTGGCATCCAGACCCTGGTCAGGTTACTTCATCTACCGGATATGGTTGAGGAAGATAACACTGACCATGTTTTCCAAACTCACATCCACAAACTGAAGAAGGGATGCGTGTTCGTCCTTGCAACTCTCGCCAGAAAGCCACAGTATCAGCTACTTATCGTAGATTCTGGAGCCTTGTTGTGTCTTCTGCGCTTGTTAAAGAGCCACAAGACCATTCCCAATTTTCTACCAGTTGCTGGTTTTCTAAAGAGGGTGGTTGATGCAATAGCCAGACTGGCTTACAGAAATAACGCAGTTAAAACACTCATTAGAATGGAAGATGGCATCCCTCCTCTTGTTGAATTGCTTGATTTCAAGGTGAAAAAGGTGCAGCTCACGGCTGCAATGGCCTTGGGAACATTGGCAGCTAGTAATGCTCACAATATAAACAAGATGGATCTGATTAAACTAATGGTAGAGACTTCACAGCGTGTTAGAAGAAAAGTTCTTCTAGCTGGAGCTTTACAACCTCTCATCTGTTTACTTAGTTCCACCTTTTCGGAGAGCCAAACATTAGCAGCAATTTTACTTGGTCAATTTCTAGCGACTGATTCAAATTTGAAGGTTCATTTATCTCAAAGAGGAGCTATTCCACCATTAGTTCACATGATTAAGTCCCAAAATACAAACCTTCGGAATTCATCAGCTTATGTACTAGCGAGCTTAGCACAGGACTCGCATAATCAAGTCAGTATTGCTCATAGTGGAGGTGTAGAGCCTATGATCAATCTTCTTCACTCAGAGAATGCAACAGTTCAACAATATGCTGCTCGTGTTCTCTATTTTCTTGCTGATAATGAGGACGTTGTTGCAAACATTATTAAGGTTGGCGGTTTTCAAAAACTAAAGGATGTACATTTCACAGATGAATCTGTTAGAGAGTATGTAGCAATGGCGTTATTAAGATTAGAACGAAACATGCGAGGGCGAGCATTGAAATACCTAATATATCTTATGCGCTCGGGGGAAGAACAGGTCAAAAGATATGTAGTTATTGCTCTTGCTCATTTATGTTGTCCTCCAGATTATGAAATTGTATTCATTCACAATCATGGATTACAATTGCTGCTGGATATTCTTCAATCTGGAAGCGTAACACAGAAGCGCGAGGCTTCACTGGCACTTAGCATATTGGCTAATAGAGCCAGTTTCATTTCCTCTCTCATTCCTGCTGCTATTTCTCCATCACCAAATTCCCAGATGGAGTTGGGCAAGGAATATGTAAACAATGCAAAACTTTCTGATGTCACATTCCTGGTTGAAGGTGGAGGAGCATCTGCTGCAATTAATTTCAGAAGAACATTTTATGCTCACAAAGATCGTTTAGTAGCTTCAAAAGTGTTTCAGGCCATGTTTGAGGCAGAGTGTTCGGAAAAGGAGGCCAAACAAGCAAAGATCCCAAATATCAAATGGGATGTCTTTGAATTGATGATGAGATTTATATACACTGGAAGAGTAAATGTTAAATTTGATCATGCTGAAGACCTCCTAAAGGCTGCAGATCAATATCTTCTTGACGACCTTAAGCTTATTTGTGAACGTGTTATTGCTAAAGGTATTTCACGTGAAAATGTTTTACCACTGTTCGAGCTCTCAGAACATCTCAGTGCTAATACATTGAAACATGCATGCGTACTATATATGCTAGAGAAATTTGAAAAATTGTATTCAAGACCATGGTATTATCCCATGCTTAATCGCATTGTACCACACATACAAACTATCTTCTCAACTTTACTTACTGTGGATGGAAGCAGTGAATCTGTTGCGTATCTGTATCAGTAG 2232 0.4234 MDTCPTARVRRWWLEPCSTARTATMVSLEGGAVRACVVARSTCIRTEDTWRFGDSTAYRKGHTVRESLKRKIQEEVKDSHCKRLRPTFTSFILQNLSLLSSFNHAVTRTAITVLVRLCKITKHEIHEDFMYTIVKNGGIQTLVRLLHLPDMVEEDNTDHVFQTHIHKLKKGCVFVLATLARKPQYQLLIVDSGALLCLLRLLKSHKTIPNFLPVAGFLKRVVDAIARLAYRNNAVKTLIRMEDGIPPLVELLDFKVKKVQLTAAMALGTLAASNAHNINKMDLIKLMVETSQRVRRKVLLAGALQPLICLLSSTFSESQTLAAILLGQFLATDSNLKVHLSQRGAIPPLVHMIKSQNTNLRNSSAYVLASLAQDSHNQVSIAHSGGVEPMINLLHSENATVQQYAARVLYFLADNEDVVANIIKVGGFQKLKDVHFTDESVREYVAMALLRLERNMRGRALKYLIYLMRSGEEQVKRYVVIALAHLCCPPDYEIVFIHNHGLQLLLDILQSGSVTQKREASLALSILANRASFISSLIPAAISPSPNSQMELGKEYVNNAKLSDVTFLVEGGGASAAINFRRTFYAHKDRLVASKVFQAMFEAECSEKEAKQAKIPNIKWDVFELMMRFIYTGRVNVKFDHAEDLLKAADQYLLDDLKLICERVIAKGISRENVLPLFELSEHLSANTLKHACVLYMLEKFEKLYSRPWYYPMLNRIVPHIQTIFSTLLTVDGSSESVAYLYQ* 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03014 743 SUPERFAMILY ARM repeat 98 282 IPR016024 -
Lapu6g03014 743 Gene3D - 286 545 IPR011989 -
Lapu6g03014 743 Pfam Armadillo/beta-catenin-like repeat 374 409 IPR000225 GO:0005515
Lapu6g03014 743 SMART arm_5 415 454 IPR000225 GO:0005515
Lapu6g03014 743 SMART arm_5 488 529 IPR000225 GO:0005515
Lapu6g03014 743 SMART arm_5 126 181 IPR000225 GO:0005515
Lapu6g03014 743 SMART arm_5 374 414 IPR000225 GO:0005515
Lapu6g03014 743 SMART arm_5 291 331 IPR000225 GO:0005515
Lapu6g03014 743 SMART arm_5 182 230 IPR000225 GO:0005515
Lapu6g03014 743 SMART arm_5 232 272 IPR000225 GO:0005515
Lapu6g03014 743 SMART arm_5 333 373 IPR000225 GO:0005515
Lapu6g03014 743 ProSiteProfiles BTB domain profile. 563 639 IPR000210 GO:0005515
Lapu6g03014 743 SMART BTB_4 563 669 IPR000210 GO:0005515
Lapu6g03014 743 Pfam BTB/POZ domain 555 665 IPR000210 GO:0005515
Lapu6g03014 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 344 386 IPR000225 GO:0005515
Lapu6g03014 743 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 427 IPR000225 GO:0005515
Lapu6g03014 743 Gene3D - 215 285 IPR011989 -
Lapu6g03014 743 Gene3D - 91 210 IPR011989 -
Lapu6g03014 743 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 282 730 IPR044282 -
Lapu6g03014 743 Gene3D Potassium Channel Kv1.1; Chain A 553 707 IPR011333 -
Lapu6g03014 743 SUPERFAMILY ARM repeat 220 547 IPR016024 -
Lapu6g03014 743 SUPERFAMILY POZ domain 547 668 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03014 Lapu-Chr6 40487762 40494747 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03014 301 524 U-box Gene Family AT2G23140 26.786 1.23e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lapu6g03014 BTB 1.1e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03014 - - gmx:100783124 577.015