Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03008 ATGAGTCTTCCACAAGCTGCTGCTGCTGCTAGTCCTCCTCCACATCTCTATCCACAGGAGCTACAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCTATACTCTTCTCCATCATTCTCTTCCTCTTGTTTTACTTGTTCTACCTCAAGAGAAGGGCTTCCTCTCTCTCTTCCTCTTCTCCTCACTTGCTTCCAAGGACCATTGCCAACCCACCAACCACCACTCCCTATCATTCATCACCTTGTCGATTGGATCTGACCCTCCAATTCCTGGAAAAGCTTCCAAGGATTTTATTTGATGAGGATTTGCTAGCAAGAGATTCACTTTGTTGTGTTTGTCTGGGGGAGTTTGAGGTGAAGGAAGAGGTGGTGCAGATTCCTTATTGCAAGCACGTTTTCCACTTGGATTGCATACATCACTGGCTGCTATCAAACTCCACTTGTCCACTTTGTAGATGTTCCATCATCCCCACTACTACCAAGTTCATCAATCCAGCACCGCCTATTAATATTATATCAGACCCACCCCACCATGGTGCTATCTTTTCAGACACTCCATTGCACACTCCATCATTGCCACCTCACTCACAACATCACCATCAACCTGGTGCTTCCTCAAATGCTGCTAATTTCCCAAGGGAATGA 648 0.4552 MSLPQAAAAASPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSPHLLPRTIANPPTTTPYHSSPCRLDLTLQFLEKLPRILFDEDLLARDSLCCVCLGEFEVKEEVVQIPYCKHVFHLDCIHHWLLSNSTCPLCRCSIIPTTTKFINPAPPINIISDPPHHGAIFSDTPLHTPSLPPHSQHHHQPGASSNAANFPRE* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03008 215 SUPERFAMILY RING/U-box 89 160 - -
Lapu6g03008 215 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Lapu6g03008 215 CDD RING-H2_EL5-like 111 153 - -
Lapu6g03008 215 SMART ring_2 111 152 IPR001841 -
Lapu6g03008 215 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 26 167 - -
Lapu6g03008 215 Pfam Ring finger domain 111 153 IPR001841 -
Lapu6g03008 215 FunFam Putative E3 ubiquitin-protein ligase RHA4A isoform A 80 158 - -
Lapu6g03008 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 158 IPR013083 -
Lapu6g03008 215 MobiDBLite consensus disorder prediction 192 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03008 Lapu-Chr6 40426615 40429126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03008 22 158 C3H Transcription Factor Family AT4G10150 43.066 9.80e-35 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03008 K19039 - gmx:100794298 299.286