Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03006 ATGACGGAGGTGGCGAGATCAGTGGTGCACGACGTTTTAGGTCAAAGAGTCGTCGACGTCGACCAGCCAATTGTTGATTACATCGTCAACGTCCTCGCCGACGATGACTTCGACTTCGGCCTCAACGGCGAAGGCGCCTTCGAAGCCCTCGGCGAGCTCCTTGTTGCCGCCGGATGCGTCGACGATTTCTCCGAGTGCCGCTCCGTGTGCAGCACATTGTGCGACAAGTTCGGGAAGCATGGTTTGGTGAAGGAGAAGCCTGCTGTGCGGAGCCTGGCGGCGCCGTTTCGAATGAACGAAGGGTTGGACGACGTCCAAGCGCCCAAGAAGAAGCCCGAGCCTGTCGACGGCCCTCTGCTATCGGAACGTGACCGTCTAAAGCTAGAGAGAAGGAAGCGCAAGGAGGAACGCCAGCGAGAGGCACAATACCAAATGCACTTGGCAGAGATGGAGGCGGCGCGTGCGGGGATGCCAGTGGTGTGTGTGAGGCATGAGAGTGGTGGGGGACCAAACGTGAAAGACATTCACATGGAGAATTTCAATATCTCGGTTGGTGGGCGCGATCTAATTGTGGATGGTTGTGTCACACTTTCGTTTGGAAGGCATTATGGTCTGGTAGGAAGGAATGGGACTGGGAAAACCACTTTTCTTAGACACATGGCTATGCATGCCATTGATGGTGTTCCAAGGAATTGTCAAATATTGCACGTGGAGCAAGAGGTGACAGGTGATGAGATCACAGCCTTGCAGTGTGTCCTTAACTCTGACATTGAGAGGGCTCAGCTTATTGAGGAAGAAGCTCAGTTAGTAGCCGAACAGAGGGAGTTTGAGGACAAAATCGAAAAGGGTGACACAAATGAAGTGGTTGGCAGGGATAGCATTTCACAAAGGCTTGAGGAAATATATAAGAGGCTTGAACACATTGACGCGGATTCTGCAGAGGCACGAGCAGCATCTATATTAGCGGGTTTGAGTTTCTCTCCCGAGATGCAGAAGAAGGCAACAAAAACATTTTCAGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCATTGTTTATAGAGCCTGATATACTGCTTCTTGACGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAGTCGTACTTGGTTAAATGGCCAAAAACATTTATTGTTGTTTCACATGCTAGAGAATTTTTAAACACGGTGGTTACTGATATAGTTCACTTACAAAACCAAAAGTTGACTACTTATAAAGGGAATTATGACACCTTTGAGAGGACTCGAGAAGAACAAATTAAAAATCAGCAAAAAGCATTGGAGGCAAATGAGCGCGCAAGATCTCATATGCAGACTTTTATTGACAAGTTCCGTTATAATGCAAAGAGGGCATCACTTGTTCAATCTAGAATCAAGGCTTTGGAGCGAATGGGTCATGTGGATGAAATTGTTAATGATCCTGACTACAAATTTGAGTTCCCCACTCCAGATGATAGACCTGGTCCACCAATAATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGGGGCCCCATTCTTTTTAAGAATTTGAACTTTGGGATTGATCTTGACAGCCGCATTGCAATGGTTGGACCAAATGGTATTGGCAAATCAACTATACTTAAGCTAATTGCTGGGGAACTTCATCCCAGTTCTGGGACTGTCTTCCGTTCTGCTAAGGTTCGTATAGCAGTGTTCAATCAACACCATGTTGATGGACTGGACTTATCCTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGAGTTCCAGAACAGAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTAACTGGAAATCTTGCATTGCAGCCAATGTATACTTTGTCAGGTGGTCAGAAAAGCAGGGTTGCCTTTGCAAAGATAACTTTTAAGAAGCCACACATAATATTGCTTGATGAGCCTTCCAATCATCTGGATTTGGATGCTGTTGAGGCGCTTATCCAAGGTCTTGTCCTGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAACACCTTATCTCTGGAAGCGTGGAGGAACTATGGGTTGTATCCGAAGGAAGAGTGGCACCATTCCATGGCACGTTCCAAGATTACAAGAAGATACTCCAATCCTCCTAG 2139 0.4698 MTEVARSVVHDVLGQRVVDVDQPIVDYIVNVLADDDFDFGLNGEGAFEALGELLVAAGCVDDFSECRSVCSTLCDKFGKHGLVKEKPAVRSLAAPFRMNEGLDDVQAPKKKPEPVDGPLLSERDRLKLERRKRKEERQREAQYQMHLAEMEAARAGMPVVCVRHESGGGPNVKDIHMENFNISVGGRDLIVDGCVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGVPRNCQILHVEQEVTGDEITALQCVLNSDIERAQLIEEEAQLVAEQREFEDKIEKGDTNEVVGRDSISQRLEEIYKRLEHIDADSAEARAASILAGLSFSPEMQKKATKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIVHLQNQKLTTYKGNYDTFERTREEQIKNQQKALEANERARSHMQTFIDKFRYNAKRASLVQSRIKALERMGHVDEIVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELHPSSGTVFRSAKVRIAVFNQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSEGRVAPFHGTFQDYKKILQSS* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03006 712 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 153 711 - -
Lapu6g03006 712 CDD ABCF_EF-3 502 694 - -
Lapu6g03006 712 FunFam ABC transporter F family member 3 127 447 - -
Lapu6g03006 712 CDD ABCF_EF-3 175 411 - -
Lapu6g03006 712 Gene3D - 464 712 IPR027417 -
Lapu6g03006 712 Gene3D - 127 447 IPR027417 -
Lapu6g03006 712 MobiDBLite consensus disorder prediction 103 138 - -
Lapu6g03006 712 Coils Coil 259 279 - -
Lapu6g03006 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 175 434 IPR003439 GO:0005524
Lapu6g03006 712 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524|GO:0016887
Lapu6g03006 712 Pfam ABC transporter 405 485 IPR032781 -
Lapu6g03006 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 483 704 IPR027417 -
Lapu6g03006 712 ProSitePatterns ABC transporters family signature. 621 635 IPR017871 GO:0005524|GO:0016887
Lapu6g03006 712 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 502 711 IPR003439 GO:0005524
Lapu6g03006 712 MobiDBLite consensus disorder prediction 101 138 - -
Lapu6g03006 712 FunFam ATP-binding cassette sub-family F member 3 464 712 - -
Lapu6g03006 712 SMART AAA_5 527 694 IPR003593 GO:0016887
Lapu6g03006 712 SMART AAA_5 199 411 IPR003593 GO:0016887
Lapu6g03006 712 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 436 IPR027417 -
Lapu6g03006 712 Pfam ABC transporter 196 366 IPR003439 GO:0005524
Lapu6g03006 712 Pfam ABC transporter 519 649 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03006 Lapu-Chr6 40399160 40410326 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03006 458 663 Calmodulin-binding Proteins AT2G36910 26.337 5.26e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03006 K06158 - gmx:547980 1346.26