Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03005 ATGGCAATGGTTGAGTCTCTTAATGTTACAAGTCTAAGGAATAAGCTCAAGACGCTTTGTGCTGTGGATGGCTGGTCCTACGTCATTTTCTGGCGCATTCATCCGCAAAATTCATCGATGCTGAGCATAGAAGATGTATATTATGAAGATCAATTGGGAGAAGAAATTGTTAACACAGTTGCACATTTCCATTCGATGGGTGAAGGAGTTGTTGGTCAAGCTGCTTTGACTGGCAAGCACAGATGGGTGGACTCAGATGGTCAAACGTGTGAGGATGATTATTTGCATCCACAATTCTTGTCTGGGATAAAGACAGTTGTGGTGATATCTGTTAAACCATGGGGAGTGGTACAATTTGGATCCAAAAGGAAGATTTTAGACAGAGTGAAATTTGTGGAACAAACAGAAAGGTTGTTAAGGGGAATAGAAGATGAGGGTTTGCTTGATGTATTAAATAGTAGAGATCTATATCTAGATTGTGAAAATTGTGATCTCAATGGATTGTTGGCTTCCATATCTTCTGAAAATTTGTATGATTGGAATCTTAAATCTGTTTATAGTGACAACTCTGAAATGCTATTGGGAAATTCATGTTCCTATGCAAGTCTGGATGATTCCTTCCCTTCCATGGATATGATTCTTGTTGAAGAAGGAACCACACCGATGCATGGATTCTCTTATCTTTGTGACCAATTAGCACCTGCCATAGAAGCTCAAGCTGTATTCTCGGATAGGGATAGTACTGATTATTCTATGAACAACATAATTTCCAGAAACCCCAGTTTTGGCACATGGAGTGGTGAAATTTCATCATTGAATTCACTGGGGCAACAACGGGTATCTGAGATAAGGGATGAAGATGTTATGGATGTGCACTGTAAAGTGGCAAATGCATTTTCTAGTAACAACAAACTACCTGTTCAGGATTCAAAATTGTCCTCATTATATGGTGAGAATAGGGTGTTAGACCCAACATGTTCATTTCAATACCACATAGGATGTCCACTGGATATCCAACATTCTGCTCAATCTAGTATTGTGGCAGAAGTTAATTATGCTGATACTTTCAGTATGATGCATGATCTCCCCAAGGACCTAGAGCCAGCTGATTCATTAGAACAATTTTCGAAGTTCTTCTCCATGAATGATCTCTGCCATTTGTTAGCTCCTTCAGACCACGACATTTATGGAACAGTGACTGCATTGGATGAGTCACAAGGATTTAATACCCCGTCTTTTGGTCTGATTGGTAGTGGAGGCATTCATGATGTCCCAGTCACATGTCAAGCTGAGAATATTAGTTCTATCACAGCTACACCCAACTTGGATGGTCAAGAAACATACTTACCGATGCATTGTTCTGAAAATGGTCTCTTGGATAGCATGAGACATCATTTGAGCTGTGACCAAGCTGAGGAGTGGTGGGGCAGTGTGGCCATACTTACACCAGTGCTGAGTGCTGCTGTTACTGACACTGCTTTCTCAGATTGCATATCAGAGTCAAATGTTGGAACATTTGGCTCTGGAAAGAGATTATTCTCAGAGTTAGGAATTGAAGAGTTTTTTAGTGGTTCTAATTTTGGAGATGAATCATCAACCAATAGAAAGCAGAGGACAGAATCTTCACCTGAGAATAGAAATCCAAAGCATTTGGCTAGTCATGCTTTGGATCCTAAATTGAACATGACAAACAATCTTGTAGACAAGAAAGAAATGTTCTCAAAGTCACAGGTAGGAGTAGGAGGCTTGTTGATAAATGACGGAAATAGCAATACTGGTCCTGTACAAGAAAAGCCTCAAAAGGTAGTGCAACACAACAAGGTCACAAGGAAAAGGGCTAGGCCAGGAGAAACAACTCGACCAAGACCGAAAGATCGTCAGCAGATTCAAGACCGCATTGGAGAGTTGAGAGGGATCATTCCCAATGGTGGAAAGTGTAGCATTGATTCTTTGTTAGACCGAACCATCAGATACATGATATTCTTACAAAGCATCACCAAGTATGCAGACAAGCTGCAAGAACCCAGTGAGCCTAAGCTCATTGAGATGGCAAAAGATAGCAATGTGGGAGATAGCAAGAAAAGTGGTGGTGGTGTTACATGTGGATTTGAAGTGGAAGGTCAAACAATAGTATGTCCAATTATAGTGGAGGATATGGACCCACCTGGCCAAATGCTTATAGAGATGCTTTTTGAAGAGCAGGGTTCCTTCCTTGAAGTAGTGGACATCATTGGAGGGTTTGGGTTGAATATCTTGAAGGGAAGGATGGAAATTAGGGAAACTAAAATATGGGCACGCTTTATTGTTGAGGCGAACAAACATGTAACAAGGATAGATGTATTTTGGTTCCTAATCAGACTTCTACAACAGAAAAACGCATCTGGAACAGATTCACCTAATTGG 2403 0.4066 MAMVESLNVTSLRNKLKTLCAVDGWSYVIFWRIHPQNSSMLSIEDVYYEDQLGEEIVNTVAHFHSMGEGVVGQAALTGKHRWVDSDGQTCEDDYLHPQFLSGIKTVVVISVKPWGVVQFGSKRKILDRVKFVEQTERLLRGIEDEGLLDVLNSRDLYLDCENCDLNGLLASISSENLYDWNLKSVYSDNSEMLLGNSCSYASLDDSFPSMDMILVEEGTTPMHGFSYLCDQLAPAIEAQAVFSDRDSTDYSMNNIISRNPSFGTWSGEISSLNSLGQQRVSEIRDEDVMDVHCKVANAFSSNNKLPVQDSKLSSLYGENRVLDPTCSFQYHIGCPLDIQHSAQSSIVAEVNYADTFSMMHDLPKDLEPADSLEQFSKFFSMNDLCHLLAPSDHDIYGTVTALDESQGFNTPSFGLIGSGGIHDVPVTCQAENISSITATPNLDGQETYLPMHCSENGLLDSMRHHLSCDQAEEWWGSVAILTPVLSAAVTDTAFSDCISESNVGTFGSGKRLFSELGIEEFFSGSNFGDESSTNRKQRTESSPENRNPKHLASHALDPKLNMTNNLVDKKEMFSKSQVGVGGLLINDGNSNTGPVQEKPQKVVQHNKVTRKRARPGETTRPRPKDRQQIQDRIGELRGIIPNGGKCSIDSLLDRTIRYMIFLQSITKYADKLQEPSEPKLIEMAKDSNVGDSKKSGGGVTCGFEVEGQTIVCPIIVEDMDPPGQMLIEMLFEEQGSFLEVVDIIGGFGLNILKGRMEIRETKIWARFIVEANKHVTRIDVFWFLIRLLQQKNASGTDSPNW 801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03005 801 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 12 50 IPR025610 -
Lapu6g03005 801 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 136 IPR025610 -
Lapu6g03005 801 MobiDBLite consensus disorder prediction 610 628 - -
Lapu6g03005 801 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 11 797 IPR043561 GO:0003700|GO:0006355
Lapu6g03005 801 MobiDBLite consensus disorder prediction 533 553 - -
Lapu6g03005 801 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 626 668 IPR036638 GO:0046983
Lapu6g03005 801 MobiDBLite consensus disorder prediction 588 628 - -
Lapu6g03005 801 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 613 662 IPR011598 GO:0046983
Lapu6g03005 801 MobiDBLite consensus disorder prediction 524 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03005 Lapu-Chr6 40387736 40391827 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03005 610 798 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 52.381 2.10e-58 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03005 - - pvu:PHAVU_006G000400g 1400.19