Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g03003 ATGGCCTCTTCCCACGTTCTCGAGAAGGACCCTACCTCCAGATACGCCCGGTACGATGAAGTGTTGGGGAAAGGAGCCTTCAAGACCGTGTACAAAGCGTTTGACGAAGTGGACGGAATCGAAGTTGCGTGGAACAGGATCAGCGCGGAGGACGTTGTGCAGACGCCGCAGCAGTTGGAAAAGTTGTACTCGGAGGTTCACTTGCTCAAGACCTTGAAGCACGACAATGTCATCAAGCTGTACAATTATTGGATCGATGATACCTCCGCCACTGTCAACATGATAACCGAGCTGTTCACCTCCGGGAGCTTGAGGCAGTACCGCAAGAAGCATAAGAATGTGGATATGAAAGCCATCAAGAACTGGGCGCGGCAGATTCTCCGTGGCTTGTGCTTTCTGCACAGTCAAACTCCTGCTATCATTCATAGGGACCTGAAGTGTGACAATATTTTTGTCAATGGGAATAGTGGACTGGTTAAAATTGGTGATCTTGGTTTGGCAATTGTTATGCAACAGCCTACTGCCCGCAGTGTCATCGGTACACCGGAGTTTATGGCCCCAGAGCTTTACGAGGAGGACTACAATGAACTTGTTGACATATATTCCTTTGGTATGTGCATCTTGGAAATGATCACCTGCGAATACCCGTACAGTGAATGTAAAAATCCAGCTCAGATATATAAGAAAGTTACCTCTGGTATAAAGCCTGCTGCTCTTGCTAAAGTAAATGATCCTGAAGTGAAGCAATTCATAGAGAAATGTCTAGTTCCAGCATCAGTGAGACCGTCTGCATGTGAACTACTGAAAGACCCATTCCTTGCAACTGAAAACGCAAAGGAGATCAATCATGATACACTGCAGCTGCCTAATAGTCATCAAACCAAATTGCTGAATCCATCCATGTGCAAGCCTCATCCCATGGAGATAGATTCTAACTCTAGGCGAACCTCACCTGGCTCCTCTGTGGGAAGAATTGAAGAATCTTCTCAGGTTTCAACTTTTGATCTCGTGAGGATGACCGAGAATAACGAATTTAGGCTAAGAGGGGAGAAAAATGCTGAAAGTACAATTTCACTTACACTGCGAATCGCAGATGCACGTGGTGGAGCAAGGAATATCCATTTTCCATTCTACATCGATTCTGATACAGCAATTTCCATTGCCGAGGAGATGGTGGAACATCTGGAACTCACAAACGAAGATGTATCTGTCATTGCAGAGCTAATACAAGACATGATTGTTAAGCTGGAGCCCAACTGGAAGCCCTTGTGTGAGAACCTCTCGTCTGGGACAGATCATTTGTACGGGACCTCTTCAGAAGTTCAGAATGATGAACAGTTGAGGTGTCTTTGGCCATTACAATCAGGTGACTACGATATGAAGACGATGTACGAGGATCTAGTTCGCCCAGGGCATGTGGATGGAGGTGATCAGGAGAAACAAGAATCTGTTATGTCAGATATATCTGCAGAGTGTGGGATTACGATTGCGTCAGATTCTAAAGGTGGTCTGGAACCCGACATTTTTATTTTCGATGAATTCTGGGAGGGGTTCGATGTATTCAATTCCAATTCAGATGACAGGTTTAGTGGGCAAGAGGAGGGACAAAAGAATGAATCAGAGAACTCAGCAGGCTCTCTTATCAATTCATGTTGCAGCCCATCCAAAAACTTTGACATGTCAAGCACAGGTTCTATTAATCTAGTTGACAAGGAGCCTTCGGATGAGCTGCAGTTGGAGCTTGAAGCAATAGAAACACAGTATCAACAATGCTTTAGGGAGCTTGTGAAGATGAGGGAGGAAGCCATAGAGAACGCAAAAAGGAGATGGGTAACAAGGAAGAAGATACCGGTCACGTGA 1860 0.4538 MASSHVLEKDPTSRYARYDEVLGKGAFKTVYKAFDEVDGIEVAWNRISAEDVVQTPQQLEKLYSEVHLLKTLKHDNVIKLYNYWIDDTSATVNMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSQTPAIIHRDLKCDNIFVNGNSGLVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEDYNELVDIYSFGMCILEMITCEYPYSECKNPAQIYKKVTSGIKPAALAKVNDPEVKQFIEKCLVPASVRPSACELLKDPFLATENAKEINHDTLQLPNSHQTKLLNPSMCKPHPMEIDSNSRRTSPGSSVGRIEESSQVSTFDLVRMTENNEFRLRGEKNAESTISLTLRIADARGGARNIHFPFYIDSDTAISIAEEMVEHLELTNEDVSVIAELIQDMIVKLEPNWKPLCENLSSGTDHLYGTSSEVQNDEQLRCLWPLQSGDYDMKTMYEDLVRPGHVDGGDQEKQESVMSDISAECGITIASDSKGGLEPDIFIFDEFWEGFDVFNSNSDDRFSGQEEGQKNESENSAGSLINSCCSPSKNFDMSSTGSINLVDKEPSDELQLELEAIETQYQQCFRELVKMREEAIENAKRRWVTRKKIPVT* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g03003 619 CDD STKc_WNK 14 273 - -
Lapu6g03003 619 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 7 557 - -
Lapu6g03003 619 FunFam Probable serine/threonine-protein kinase WNK1 1 97 - -
Lapu6g03003 619 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g03003 619 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Lapu6g03003 619 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Lapu6g03003 619 ProSiteProfiles Protein kinase domain profile. 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g03003 619 FunFam probable serine/threonine-protein kinase WNK9 99 278 - -
Lapu6g03003 619 SUPERFAMILY Protein kinase-like (PK-like) 18 309 IPR011009 -
Lapu6g03003 619 Gene3D - 355 449 - -
Lapu6g03003 619 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 357 413 IPR024678 GO:0004674|GO:0005524
Lapu6g03003 619 SMART serkin_6 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu6g03003 619 MobiDBLite consensus disorder prediction 525 546 - -
Lapu6g03003 619 Gene3D Transferase(Phosphotransferase) domain 1 99 281 - -
Lapu6g03003 619 Coils Coil 574 601 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g03003 Lapu-Chr6 40367056 40370948 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g03003 1 618 MAP Kinase Kinase Kinase AT5G41990 51.780 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lapu6g03003 Pkinase 5.3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g03003 K08867 - gmx:100272202 1006.13