Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02997 ATGAAAGGGAAGAGCGGAGAATTATTTATCGATTCGGCATCCTCATCGCTGGTCGCCAACGCAAACGCGCTTCAGCAGCGCCTCCAGTTCATTCTGCAGAGCCGTCCCGAGTGGTGGGTCTATGGCATATTCTGGCAAGCCACCAAAGACAGCGACTCCCGTCTAACACTGGAATACGGAGACGGATTCTTCAGGGGGACAAAGGGTAGAGAGGAAACGGAGGTCAGAATGTCGGAGGAACAAACGAGGAACTACATGAACGACATCGAATGGTTCTACAGGGTGTCGCAGACTCGCTCGTATGCCGCCGGGGACGGTGTTGTGGGGTGCGCCTTCAGTTCGGGGGTGGATGTTTGGTTGAGCGGAGTGAACGAGTTTGAACTGAATGATTGCGACGAGAGAGTGGGGGAAGCACGAAGGCATGGGATCCAGACCTTAGTGTGCGTTTCGGTGGCAGGTGGGATCCTTGAGCTGGGTTCGCATCAGGTGTTGAAACTGGATTATGGGGTTCTGCAAATGGCGAAATCGGTGTTTGAGGAGAGTGAGAATCCGGTTTACAAGGGGTGGGTGGTTCCCGGCGGCGGCAGGGAGAAAGAGGGAGAGAGAAGAAGAGAGTTGGATGGATCGTCGACGGACTCCTCAGGGCCATCGGATCATGACGCGGAGGCTCCTCAGGCATTCGCACAAGGCAACGAGAACGTTCCCATGATGATGGGGAGAAGGGCAGGGAGGGGACGTGAGACGGTGGCCGTAAATCACGTGGAGGCTGAGAGGCAGCGGCGAGAGAAGCTGAATCAGAGATTCTACGCTCTTCGCTCAGCGGTTCCTAACGTCTCTAAGATGGACAAAGCCTCCCTGCTCTCGGACGCCGTGGACTATATCAATCAACTGAAGGCCAAAATCAACCACCTCCAGGCGGCGTTCCAGAGCAAACAGGAAGGTCCGGCAGAGCAGGTCCAAGCCCAAGCCGTTCCCTCAGTCCCCTCGGCAGCCACTAACATGAGAGTTGAAGTCCAGATGTTGGGGTCGGAGGCCATGATAAGGGTGCAGAGCCTAAACGTTAACCACCCTTCTGCCCGCTTAATGGATGCTCTGAGGGACGTGAATCTCCAAATTCTGCATGCCACAATCTCCAACATCAAAGAGATGATGCTGCAGGACGTCGTCGTCAGGGTTCCCCATGATCTCATGACCCAAGAGGCCCTCCAAAATGCTATTATTCGCAGACTCTGA 1233 0.5507 MKGKSGELFIDSASSSLVANANALQQRLQFILQSRPEWWVYGIFWQATKDSDSRLTLEYGDGFFRGTKGREETEVRMSEEQTRNYMNDIEWFYRVSQTRSYAAGDGVVGCAFSSGVDVWLSGVNEFELNDCDERVGEARRHGIQTLVCVSVAGGILELGSHQVLKLDYGVLQMAKSVFEESENPVYKGWVVPGGGREKEGERRRELDGSSTDSSGPSDHDAEAPQAFAQGNENVPMMMGRRAGRGRETVAVNHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVDYINQLKAKINHLQAAFQSKQEGPAEQVQAQAVPSVPSAATNMRVEVQMLGSEAMIRVQSLNVNHPSARLMDALRDVNLQILHATISNIKEMMLQDVVVRVPHDLMTQEALQNAIIRRL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02997 410 Coils Coil 294 314 - -
Lapu6g02997 410 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 24 178 IPR025610 -
Lapu6g02997 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 246 315 IPR036638 GO:0046983
Lapu6g02997 410 MobiDBLite consensus disorder prediction 189 234 - -
Lapu6g02997 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 248 297 IPR011598 GO:0046983
Lapu6g02997 410 MobiDBLite consensus disorder prediction 194 209 - -
Lapu6g02997 410 Gene3D - 244 313 IPR036638 GO:0046983
Lapu6g02997 410 Pfam Helix-loop-helix DNA-binding domain 252 298 IPR011598 GO:0046983
Lapu6g02997 410 PANTHER MYC 19 409 IPR045084 GO:0003700|GO:0006355
Lapu6g02997 410 SMART finulus 254 303 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02997 Lapu-Chr6 40272613 40273845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02997 24 410 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 34.146 1.60e-59 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu6g02997 bHLH-MYC_N 3.2e-33 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02997 - K13422 pvu:PHAVU_004G090300g 628.246