Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lapu6g02979 | ATGGGGCGCAAAGAGAAGCTGAAAGCGCAGGCAATAGAGGAGCACAGCGAGGACCATTTCAGCGGCGCTTCCACACAGTCACTCGTCTTCAGCAGCGACGATGACGAAGCCAACCAAGATCTCAGTCTCAAGATCGTCGAAAAAGCCATGCGAATGCGCGCAGTCAAGCGTGCCGCTCCAAGTGCAGACCCAAACGACGATGTTTCGTCTCCACAGACACTCGAACTCGCTGTGACCCGAAACGTCGGCGCGGATGTGCCCAGCGCAATTGATGATTTTGAAGTGATGGACAAGAAGAAAAAAACTAAGTTGAAGGTTGAGGTTGAGGCTGGGGATCAAAGTGTTGTTATAGCCAAGGAGCAAGAGATGGAGGAGACCATCAAAGCTTCTGAGAATCACGAGTCTGAGGAAGGAGGTGCAGTTCAGATAGGCGACAATATGGTTCTGCGAAAGCTGCTTCGGGGTCCGAGGTATTTTGATCCACCGAATAGTAGTTGGGGAGCGAGTTTCAATTGTTTCAATTGTGGCGAGGAAGGTCATGCTGCTGTGAACTGTTCGGTGGCAAAGCGGAAGAAGCCATGCTATGTTTGTGGTGTTTTGGGACACAATGCAAAACAATGTACTAAGACACAAGATTGCTTTATCTGTAAGAAAGGTGGTCATCGTGCTAGAGACTGTCCGGAGAAGCATGCTAGTACTCCTAGAAGCATTGCAATATGCTTGAAGTGTGGAAATTCTGGGCATGATATGTTTGGATGCAAGAATGATTATTCACTGGATGACCTTGAGGAAATTCAATGTTATGTCTGCAAGAGACTTGGCCACTTGTGCTGTGTCAATTCTGATGATGCAACACCAGGAGAAATTTCTTGTTACAAATGTGGTCGGTTGGGTCATACAGGTTTGGCATGTTCAAGGTTGCAGGATGAGATTGCAAGTGGAGGCACACCTAGTTCTTGCTTCAAATGTGGTGAAGAAGGGCATTTTGCCCGGGAGTGCACAAGTGCTGCGAAGGCAGGGAAGAGGAATCGTGACTCATCACGCACTAAAGATAAAAGATCCCATAAAGAAAATGATTACATGGGAAATAGATCAGCACCTAATGATATGGGTGTAGCTCGAAGAAAGAAACGGTCTCCTACAGAAGAAAGAGGAGGCTTTTCTCTTCCCAAGAAATCAAAGAGTAGAGGTGACTGGATGCAGGAGCATCCTGCTGAAGAAAGAGGTCTTACAACTCCAAAGAAACCCAAGAGTAGAGGTGGCTGGACAACGGAGCGTCCTGCTGAAGAAAGAGGATTTACAACTCCAAAGAAATCCAAGGGTCGAGGTGGCTGGACAACGGAGCATCCTGTGGAACATAATGGCTATACAACTCCTAAGAACTCCAAGAGTAGGGGTGGCTGGACCACAGAGCATCCTGAAGAATTCTTTCCTCCCATGGCCTCAAGGAACAGCTATAGGTTTTCAGGGACACCATCTTCCAGAAGCACCAAAATTCATTCCTTTGGTAGTGGAAGTCATACTCGAAGTTATAAATCTTCTAAGGTATGGACTGATCATGATGGAACCCCTATCTCCCAAGGTTCAGCCTGGTCAAATCGTCATAGGTTTTCTGCAACAAGGTTTGGCAACTCTAGTAGTGATGGGAATGGTAGGAATTACAGCCGGTGGTAG | 1674 | 0.4713 | MGRKEKLKAQAIEEHSEDHFSGASTQSLVFSSDDDEANQDLSLKIVEKAMRMRAVKRAAPSADPNDDVSSPQTLELAVTRNVGADVPSAIDDFEVMDKKKKTKLKVEVEAGDQSVVIAKEQEMEETIKASENHESEEGGAVQIGDNMVLRKLLRGPRYFDPPNSSWGASFNCFNCGEEGHAAVNCSVAKRKKPCYVCGVLGHNAKQCTKTQDCFICKKGGHRARDCPEKHASTPRSIAICLKCGNSGHDMFGCKNDYSLDDLEEIQCYVCKRLGHLCCVNSDDATPGEISCYKCGRLGHTGLACSRLQDEIASGGTPSSCFKCGEEGHFARECTSAAKAGKRNRDSSRTKDKRSHKENDYMGNRSAPNDMGVARRKKRSPTEERGGFSLPKKSKSRGDWMQEHPAEERGLTTPKKPKSRGGWTTERPAEERGFTTPKKSKGRGGWTTEHPVEHNGYTTPKNSKSRGGWTTEHPEEFFPPMASRNSYRFSGTPSSRSTKIHSFGSGSHTRSYKSSKVWTDHDGTPISQGSAWSNRHRFSATRFGNSSSDGNGRNYSRW* | 558 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lapu6g02979 | 557 | MobiDBLite | consensus disorder prediction | 334 | 362 | - | - | |
| Lapu6g02979 | 557 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
| Lapu6g02979 | 557 | SUPERFAMILY | Retrovirus zinc finger-like domains | 210 | 256 | IPR036875 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | ProSiteProfiles | Zinc finger CCHC-type profile. | 320 | 335 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | Gene3D | - | 116 | 211 | - | - | |
| Lapu6g02979 | 557 | MobiDBLite | consensus disorder prediction | 451 | 466 | - | - | |
| Lapu6g02979 | 557 | ProSiteProfiles | Zinc finger CCHC-type profile. | 291 | 304 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | PANTHER | ZINC KNUCKLE (CCHC-TYPE) FAMILY PROTEIN | 1 | 420 | - | - | |
| Lapu6g02979 | 557 | ProSiteProfiles | Zinc finger CCHC-type profile. | 194 | 209 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | ProSiteProfiles | Zinc finger CCHC-type profile. | 172 | 185 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | MobiDBLite | consensus disorder prediction | 334 | 532 | - | - | |
| Lapu6g02979 | 557 | Pfam | Zinc knuckle | 193 | 209 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | Pfam | Zinc knuckle | 213 | 228 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | Pfam | Zinc knuckle | 319 | 335 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | Pfam | Zinc knuckle | 171 | 186 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | Gene3D | - | 315 | 353 | - | - | |
| Lapu6g02979 | 557 | MobiDBLite | consensus disorder prediction | 370 | 447 | - | - | |
| Lapu6g02979 | 557 | MobiDBLite | consensus disorder prediction | 21 | 35 | - | - | |
| Lapu6g02979 | 557 | MobiDBLite | consensus disorder prediction | 484 | 532 | - | - | |
| Lapu6g02979 | 557 | SUPERFAMILY | Retrovirus zinc finger-like domains | 166 | 210 | IPR036875 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | SMART | c2hcfinal6 | 193 | 209 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | SMART | c2hcfinal6 | 171 | 187 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | SMART | c2hcfinal6 | 239 | 255 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | SMART | c2hcfinal6 | 319 | 335 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | SMART | c2hcfinal6 | 290 | 306 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | SMART | c2hcfinal6 | 212 | 228 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | Coils | Coil | 116 | 136 | - | - | |
| Lapu6g02979 | 557 | SUPERFAMILY | Retrovirus zinc finger-like domains | 284 | 336 | IPR036875 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | Gene3D | - | 260 | 309 | - | - | |
| Lapu6g02979 | 557 | MobiDBLite | consensus disorder prediction | 538 | 557 | - | - | |
| Lapu6g02979 | 557 | ProSiteProfiles | Zinc finger CCHC-type profile. | 213 | 228 | IPR001878 | GO:0003676|GO:0008270 | |
| Lapu6g02979 | 557 | Gene3D | - | 212 | 259 | - | - | |
| Lapu6g02979 | 557 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lapu6g02979 | 167 | 275 | C2H2 Transcription Factor Family | AT5G20220 | 32.800 | 6.09e-06 | 47.0 |