Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02930 ATGAAGAGACTCGATAACTCAGGCACTATGGCTACTTCCCTTTCCATGTGCCCATCAAAAGGTTTGAATGAGAGGAAGGAAACTCAGGGTTACAGTGAAGAGTTTCAGGCAATGTTAGATAGACTAGACCAGGAAGACAGCTATGAAGATTGTAGCTTAGTGTTGGAGAAGAAAAGGAGGCTGAGTTTTGACCAGGTGAAAGCCTTAGAGAGAAACTTTGAGTTGGACAACAAGCTAGAGCCAGAGCGCAAGTCAAAGCTAGCAGAAGAACTAGGCCTTCAACCGAGACAGGTTGCTATTTGGTTCCAAAATCGTCGAGCTCGTTGGAAAACCAAGCAATTGGAGAGAGACTACGGCATTCTCAAGTCCAATTATGATGTTCTCAAGGTTGAGTACAACAATCTTGAGCAAGACAATGAGGCTCTCACTATTCAGGTAAGAGAATTGAAAGAAAAGTTGTTGAGAGGTAAAGCTGAAAGCACTGAGTCAATGAAAGAAGAATCTCCCATTTCAGAGGTTAGAGACAGAGGAGCATCAGAGAGCAATTCAAATGGTGTGGTAAAGGAAGAAAGCAACGTTTCAAGCCCATTGATAAACGGACTTCAACACTCTGATTCAAGAGGGTCTCCTGATAAAATGTTTCAGACTCAGTTTATGAGAATGGAGGAGCAGAATTTCTTTAGTATCAATGAGTTCTGTTTCTTTTCAGTTGATCAATCCCCTACCCTGTAA 732 0.4208 MKRLDNSGTMATSLSMCPSKGLNERKETQGYSEEFQAMLDRLDQEDSYEDCSLVLEKKRRLSFDQVKALERNFELDNKLEPERKSKLAEELGLQPRQVAIWFQNRRARWKTKQLERDYGILKSNYDVLKVEYNNLEQDNEALTIQVRELKEKLLRGKAESTESMKEESPISEVRDRGASESNSNGVVKEESNVSSPLINGLQHSDSRGSPDKMFQTQFMRMEEQNFFSINEFCFFSVDQSPTL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02930 243 ProSiteProfiles 'Homeobox' domain profile. 52 112 IPR001356 GO:0003677
Lapu6g02930 243 ProSitePatterns 'Homeobox' domain signature. 87 110 IPR017970 GO:0000981|GO:0006355
Lapu6g02930 243 SUPERFAMILY Homeodomain-like 54 114 IPR009057 -
Lapu6g02930 243 MobiDBLite consensus disorder prediction 175 212 - -
Lapu6g02930 243 MobiDBLite consensus disorder prediction 156 174 - -
Lapu6g02930 243 Coils Coil 118 159 - -
Lapu6g02930 243 PRINTS Lambda-repressor HTH signature 83 92 IPR000047 GO:0003677
Lapu6g02930 243 PRINTS Lambda-repressor HTH signature 92 108 IPR000047 GO:0003677
Lapu6g02930 243 MobiDBLite consensus disorder prediction 1 19 - -
Lapu6g02930 243 FunFam homeobox-leucine zipper protein ATHB-6-like 60 106 - -
Lapu6g02930 243 Pfam Homeodomain 57 110 IPR001356 GO:0003677
Lapu6g02930 243 SMART HOX_1 55 116 IPR001356 GO:0003677
Lapu6g02930 243 Pfam Homeobox associated leucine zipper 112 153 IPR003106 GO:0006355|GO:0043565
Lapu6g02930 243 CDD homeodomain 57 113 IPR001356 GO:0003677
Lapu6g02930 243 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 43 216 IPR045224 GO:0003700
Lapu6g02930 243 MobiDBLite consensus disorder prediction 1 28 - -
Lapu6g02930 243 Gene3D - 61 110 - -
Lapu6g02930 243 MobiDBLite consensus disorder prediction 156 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02930 Lapu-Chr6 35938349 35940305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02930 1 153 Homeobox Transcription Factor Family AT2G22430 54.140 9.26e-51 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lapu6g02930 Homeodomain 6.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02930 K09338 - cave:132184564 273.863