Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02907 ATGTCAAGTGGAACAACATACTGGTGTTATACATGCAGGCAGCCAATCTGGCTTGAAGGGAGGGATCCCATTTGCCCCTACTGCCATGGAGGCTTTGTGCAAGAACTTAATGAGCTGCTGAGGGCAGTTTCACGCCAAAACGGGTTTTCATCACAAATGGAAGCTTTTCATCAAATGCCTGACATTATGGATGCTGTAAGAGCTGTTATGGAGCAAAGAGGTTCTGAGCCAAGAATTGGGGTCAGAGATGCTGTTGACAATTTCATGAGGCAGAGAATGGCTGGAAGCTACACAAACTTTGATGTTAGAAGGAGGTTTGGCTCCACCCCACTTCCTGATCAGACTTGGGGGGTCTATAGCTCTGGTCCTTATCTGATATTTCATGATCAACCTCCCGGGTTCACTCTCTCTAACAGTGGCGCAAGAAGTGGTCTTAGACATGTTGATTTTAGTGACTACTTTCTTGGTCCTAGACTAGAAGGACTCATTGAGCAACACATAACCAATGACCGGCTTGGTCCACCCCCTGCTTCACGCTCGTCAATTAATGCAATGCCAACCATTAAGATCACAAATGAACACCTCCAATCTGATTCACACTGTGCAGTTTGTAAGGAAAGGTTTGAACTGAGTTCTGAGGCCAGAAAAATGCCATGTTGCCACATTTACCACTCAGACTGTATTGTTCCATGGTTAGTTCAGCACAATTCATGCCCAGTTTGCCGTGTTGAGCTGCCACCTCAAGGACACCCCAGTTCCTGCAGTAGTCGAACTAGGGGAGGAAGGAATGCTAGTGGCAGTGGTAGTGACAGTATCTCGAGGAGAAGAGGGAATAGAGAGATGAACAATGGAAGGAGAAATCTACTATCATATTTGTGGCCATTTCGAACTTCTAGTTCAAATACTTGA 909 0.4576 MSSGTTYWCYTCRQPIWLEGRDPICPYCHGGFVQELNELLRAVSRQNGFSSQMEAFHQMPDIMDAVRAVMEQRGSEPRIGVRDAVDNFMRQRMAGSYTNFDVRRRFGSTPLPDQTWGVYSSGPYLIFHDQPPGFTLSNSGARSGLRHVDFSDYFLGPRLEGLIEQHITNDRLGPPPASRSSINAMPTIKITNEHLQSDSHCAVCKERFELSSEARKMPCCHIYHSDCIVPWLVQHNSCPVCRVELPPQGHPSSCSSRTRGGRNASGSGSDSISRRRGNREMNNGRRNLLSYLWPFRTSSSNT* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02907 302 MobiDBLite consensus disorder prediction 249 283 - -
Lapu6g02907 302 FunFam E3 ubiquitin-protein ligase RING1-like 164 248 - -
Lapu6g02907 302 MobiDBLite consensus disorder prediction 249 272 - -
Lapu6g02907 302 Pfam Ring finger domain 200 242 IPR001841 -
Lapu6g02907 302 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 164 248 IPR013083 -
Lapu6g02907 302 ProSiteProfiles Zinc finger RING-type profile. 201 242 IPR001841 -
Lapu6g02907 302 CDD RING-H2_RNF126-like 201 242 - -
Lapu6g02907 302 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 130 246 - -
Lapu6g02907 302 SUPERFAMILY RING/U-box 181 248 - -
Lapu6g02907 302 SMART ring_2 201 241 IPR001841 -
Lapu6g02907 302 Pfam zinc-ribbon 5 36 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02907 Lapu-Chr6 34440368 34443090 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02907 171 296 C3H Transcription Factor Family AT1G68180 41.270 1.47e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02907 K11982 - var:108344709 546.199