Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02906 ATGCGAGGACTTATGGAGCAAAGAGGTTTTGAACCAAGAATTGGATTTAGAGATGTTGTTGATAACTTCATGAGGCAGATGATGGGGGGAAGATACATAAACTTTGGTATTAGGATTAGGAGGTCTGGTTTTACCCCACTTCCTGAACGAACTTGGAGTGTGTTTATATTTACTAGACAAGAGTCTACTGCAGATCTCGAAGAATTCTCTTATCAACACATTACAAATTACCAGTTTGGTGCGTCACAACCTTCAATCGATGCAATGCCAACTATTAAGATCACACGACAACACCTCAACTTTGATTCATTGTGTCCAATTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTAACCACATTTACCACTCAGACTATATTATTCCATGGTTAGTTCAGCATAACTCGTGTCTTGTTTGCCGTAGTAAGCTGCCACCTGAAAGACATGCTAGTTCTCATGGTGAAGGAATCAAAGGGGAAGGAAATGTGAGTGATAAAAGCAAAACTACGGAGCTTAGCCTAAATACATATGAATTGTCCTCGCTTATACCCTCTTTTGATATTCTTGTATTTTCTTCATGA 597 0.3936 MRGLMEQRGFEPRIGFRDVVDNFMRQMMGGRYINFGIRIRRSGFTPLPERTWSVFIFTRQESTADLEEFSYQHITNYQFGASQPSIDAMPTIKITRQHLNFDSLCPICIERFEVGSEARKMPCNHIYHSDYIIPWLVQHNSCLVCRSKLPPERHASSHGEGIKGEGNVSDKSKTTELSLNTYELSSLIPSFDILVFSS* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02906 198 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 78 150 - -
Lapu6g02906 198 MobiDBLite consensus disorder prediction 152 171 - -
Lapu6g02906 198 SUPERFAMILY RING/U-box 85 152 - -
Lapu6g02906 198 Pfam Ring finger domain 105 146 IPR001841 -
Lapu6g02906 198 MobiDBLite consensus disorder prediction 152 170 - -
Lapu6g02906 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Lapu6g02906 198 ProSiteProfiles Zinc finger RING-type profile. 105 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02906 Lapu-Chr6 34408886 34409956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02906 86 150 C3H Transcription Factor Family AT3G60080 50.685 1.29e-17 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02906 K11982 - ccaj:109790507 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02906 6 34408886 34409956 Lapu6g02906 6 34408886 34409956 ECH
Lapu6g02906 6 34408886 34409956 Lapu6g02906 6 34408886 34409956 PCT