Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu6g02905 ATGGCCGTTGCCTTCTCAAATCTCCACACGGACTCAGGCCTCAAGTCCCTCAACGACTTTCTCACTGGGAAGACCTACGTTTCTGGCGATCAGTTTACAAAGGACGACATCAAAGTGTACGCTGCAGTTTTGGAGAAGCCGAATGACGCTTTCCCAAGTGTGGGCAAGTGGTACGAGGTTGTCTCATCTAACCTTGCTGCAAGCTTCCCTGGCAATGGTCAAGGGGTGAGATTCAGTGGCAAAGCTTCTGCTCCAGCTGAGGCGGTTCCTGCAAAACCGGATGCTTCTGCTGCGGAAGATGATGATGACCTTGATCTCTTTGGCGATGAGACAGAGGAAGACAAAAAGGCAGCTGAGGAAAGGGAGGCTTCTAAGAAGTCTGCTAAGAAGAAAGAGAGCGGAAAATCTTCTGTTCTGCTTGATGTTAAGCCTTGGGATGATGAGACAGACATGAAGAAGCTGGAAGAGGCTGTTCGCAGTGTTGAGATGCCCGGTCTGTTATGGGGAGCATCGAAACTGGTTCCTGTTGGTTATGGAATCAAGAAGTTGCAGATCATGTTAACCATCGTTGACGACCTTGTATCTGTGGACTCCCTTATTGAGGAGCAACTGACAGTGGAGCCCATCAACGAGTATGTCCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA 675 0.4844 MAVAFSNLHTDSGLKSLNDFLTGKTYVSGDQFTKDDIKVYAAVLEKPNDAFPSVGKWYEVVSSNLAASFPGNGQGVRFSGKASAPAEAVPAKPDASAAEDDDDLDLFGDETEEDKKAAEEREASKKSAKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDSLIEEQLTVEPINEYVQSCDIVAFNKI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu6g02905 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 100 108 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lapu6g02905 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lapu6g02905 224 CDD EF1B 138 224 IPR014038 GO:0003746|GO:0006414
Lapu6g02905 224 MobiDBLite consensus disorder prediction 110 132 - -
Lapu6g02905 224 MobiDBLite consensus disorder prediction 77 132 - -
Lapu6g02905 224 Gene3D - 128 224 IPR014717 -
Lapu6g02905 224 FunFam Elongation factor 1-beta 1 like 129 224 - -
Lapu6g02905 224 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Lapu6g02905 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 224 - -
Lapu6g02905 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Lapu6g02905 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Lapu6g02905 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Lapu6g02905 224 Gene3D - 5 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu6g02905 Lapu-Chr6 34391233 34393770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu6g02905 1 224 Eukaryotic Initiation Factors Gene Family AT5G12110 69.737 3.41e-103 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu6g02905 K03232 - gmx:100306132 351.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu6g02905 6 34391233 34393770 Lapu6g02905 6 34391233 34393770 PCT